sfpq (Xenopus tropicalis)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSXETG00000009682 T42862_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
SFPQ
M308_0.6 		Homo sapiens Sequence logo not available UGGAGAGGAAC SELEX
Cook et al.(2011)
489_12403470 		0.880
SFPQ
M168_0.6 		Homo sapiens KURRUKK RNAcompete
Ray et al.(2013)
RNCMPT00177 		0.880
NONO
M309_0.6 		Homo sapiens Sequence logo not available GAGAGGAAC SELEX
Cook et al.(2011)
490_12403470 		0.758
NONO
M307_0.6 		Homo sapiens AGGGA SELEX
Cook et al.(2011)
488_9001221 		0.758
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSXETP00000015440 RRM 248 312
ENSXETP00000015440 RRM 322 387
ENSXETP00000021326 RRM 248 312
ENSXETP00000021326 RRM 322 387

Links

Other RRM family RBPs
Other Xenopus tropicalis RBPs

109 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
LOC_Os03g26560 Oryza sativa LOC_Os03g26560 N 0.000
LOC_Os03g33050 Oryza sativa LOC_Os03g33050 N 0.000
LOC_Os04g19410 Oryza sativa LOC_Os04g19410 N 0.000
LOC_Os04g29500 Oryza sativa LOC_Os04g29500 N 0.000
LOC_Os05g17220 Oryza sativa LOC_Os05g17220 N 0.000
LOC_Os05g17240 Oryza sativa LOC_Os05g17240 N 0.000
LOC_Os09g04570 Oryza sativa LOC_Os09g04570 N 0.000
LOC_Os12g14010 Oryza sativa LOC_Os12g14010 N 0.000
LOC_Os12g18180 Oryza sativa LOC_Os12g18180 N 0.000
LOC_Os12g25590 Oryza sativa LOC_Os12g25590 N 0.000