sfpq (Xenopus tropicalis)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSXETG00000009682 T42862_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
SFPQ
M308_0.6 		Homo sapiens Sequence logo not available UGGAGAGGAAC SELEX
Cook et al.(2011)
489_12403470 		0.880
SFPQ
M168_0.6 		Homo sapiens KURRUKK RNAcompete
Ray et al.(2013)
RNCMPT00177 		0.880
NONO
M309_0.6 		Homo sapiens Sequence logo not available GAGAGGAAC SELEX
Cook et al.(2011)
490_12403470 		0.758
NONO
M307_0.6 		Homo sapiens AGGGA SELEX
Cook et al.(2011)
488_9001221 		0.758
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSXETP00000015440 RRM 248 312
ENSXETP00000015440 RRM 322 387
ENSXETP00000021326 RRM 248 312
ENSXETP00000021326 RRM 322 387

Links

Other RRM family RBPs
Other Xenopus tropicalis RBPs

109 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Q91017_CHICK Gallus gallus ENSGALG00000002514 I 0.894
SFPQ Taeniopygia guttata ENSTGUG00000001722 I 0.894
LOC100386194 Callithrix jacchus ENSCJAG00000001431 I 0.880
SFPQ Oryctolagus cuniculus ENSOCUG00000001877 I 0.880
SFPQ Echinops telfairi ENSETEG00000001095 I 0.880
SFPQ Procavia capensis ENSPCAG00000006164 I 0.880
SFPQ Spermophilus tridecemlineatus ENSSTOG00000014004 I 0.880
SFPQ Loxodonta africana ENSLAFG00000015951 I 0.880
SFPQ Cavia porcellus ENSCPOG00000015018 I 0.880
Sfpq Rattus norvegicus ENSRNOG00000013154 I 0.880
SFPQ Homo sapiens ENSG00000116560 D 0.880
ENSCAFG00000003595 Canis familiaris ENSCAFG00000003595 I 0.880
Sfpq Mus musculus ENSMUSG00000028820 I 0.880
ENSPPYG00000001560 Pongo pygmaeus ENSPPYG00000001560 I 0.880
SFPQ Microcebus murinus ENSMICG00000011755 I 0.880
SFPQ Gorilla gorilla ENSGGOG00000026354 I 0.880
Ame_R005060 Ailuropoda melanoleuca Ame_R005060 I 0.880
SFPQ Pan troglodytes ENSPTRG00000000518 I 0.880
SFPQ Ochotona princeps ENSOPRG00000013696 I 0.880
SFPQ Bos taurus ENSBTAG00000016328 I 0.880
LOC100069588 Equus caballus ENSECAG00000000642 I 0.880
SFPQ Vicugna pacos ENSVPAG00000006960 I 0.880
SFPQ Tursiops truncatus ENSTTRG00000013930 I 0.880
ENSACAG00000013307 Anolis carolinensis ENSACAG00000013307 I 0.879
ENSMODG00000017937 Monodelphis domestica ENSMODG00000017937 I 0.872
ENSMEUG00000014082 Macropus eugenii ENSMEUG00000014082 I 0.872
ENSOANG00000008789 Ornithorhynchus anatinus ENSOANG00000008789 I 0.865
XM_532566.2 Canis familiaris ENSCAFG00000018271 I 0.865
ENSTNIG00000011331 Tetraodon nigroviridis ENSTNIG00000011331 I 0.855
Sfpq Dipodomys ordii ENSDORG00000008109 I 0.850
SFPQ Tupaia belangeri ENSTBEG00000006238 I 0.848
ENSTRUG00000003783 Takifugu rubripes ENSTRUG00000003783 I 0.847
ENSTSYG00000009311 Tarsius syrichta ENSTSYG00000009311 I 0.833
ENSCAFG00000017608 Canis familiaris ENSCAFG00000017608 I 0.809
ENSGACG00000002034 Gasterosteus aculeatus ENSGACG00000002034 I 0.805
SFPQ Pteropus vampyrus ENSPVAG00000001865 I 0.805
ENSORLG00000007459 Oryzias latipes ENSORLG00000007459 I 0.802
sfpq Danio rerio ENSDARG00000011564 I 0.794
NONO Taeniopygia guttata ENSTGUG00000007048 I 0.786
NONO Meleagris gallopavo ENSMGAG00000008869 I 0.786
Q5ZIZ5_CHICK Gallus gallus ENSGALG00000005507 I 0.786
PSPC1_CHICK Gallus gallus ENSGALG00000017142 I 0.771
PSPC1 Anolis carolinensis ENSACAG00000002093 I 0.771
PSPC1 Taeniopygia guttata ENSTGUG00000011295 I 0.771
NONO Monodelphis domestica ENSMODG00000004445 I 0.765
PSPC1 Tursiops truncatus ENSTTRG00000003343 I 0.763
BAE54372 Xenopus laevis BAE54372 I 0.763
AAH45128 Xenopus laevis AAH45128 I 0.763
PSPC1_BOVIN Bos taurus ENSBTAG00000003934 I 0.763
PSPC1 Sus scrofa ENSSSCG00000009569 I 0.763
Pspc1 Dipodomys ordii ENSDORG00000016050 I 0.763
NONO Macropus eugenii ENSMEUG00000004294 I 0.759
NONO Procavia capensis ENSPCAG00000002541 I 0.758
Ame_R017809 Ailuropoda melanoleuca Ame_R017809 I 0.758
ENSPPYG00000020451 Pongo pygmaeus ENSPPYG00000020451 I 0.758
NONO Equus caballus ENSECAG00000008502 I 0.758
NONO Otolemur garnettii ENSOGAG00000004834 I 0.758
NONO Erinaceus europaeus ENSEEUG00000014404 I 0.758
ENSOCUG00000021848 Oryctolagus cuniculus ENSOCUG00000021848 I 0.758
XR_025068.1 Pan troglodytes ENSPTRG00000022010 I 0.758
ENSCPOG00000010263 Cavia porcellus ENSCPOG00000010263 I 0.758
LOC607081 Canis familiaris ENSCAFG00000003207 I 0.758
Q2KJ42_BOVIN Bos taurus ENSBTAG00000012152 I 0.758
ENSCAFG00000017071 Canis familiaris ENSCAFG00000017071 I 0.758
TAF1 Callithrix jacchus ENSCJAG00000013390 I 0.758
NONO Pteropus vampyrus ENSPVAG00000016503 I 0.758
Nono Rattus norvegicus ENSRNOG00000003689 I 0.758
Nono Mus musculus ENSMUSG00000031311 I 0.758
NONO Tursiops truncatus ENSTTRG00000009605 I 0.758
PSPC1 Gorilla gorilla ENSGGOG00000003414 I 0.758
LOC697263 Macaca mulatta ENSMMUG00000020481 I 0.758
NONO Microcebus murinus ENSMICG00000000232 I 0.758
NONO Gorilla gorilla ENSGGOG00000006194 I 0.758
NONO Loxodonta africana ENSLAFG00000013422 I 0.758
NONO Homo sapiens ENSG00000147140 D 0.758
NONO Vicugna pacos ENSVPAG00000002272 I 0.758
PSPC1 Erinaceus europaeus ENSEEUG00000011288 I 0.756
PSPC1 Sorex araneus ENSSARG00000000888 I 0.756
Pspc1 Rattus norvegicus ENSRNOG00000020782 I 0.756
PSPC1 Cavia porcellus ENSCPOG00000000395 I 0.756
PSPC1 Callithrix jacchus ENSCJAG00000004554 I 0.756
PSPC1 Choloepus hoffmanni ENSCHOG00000008913 I 0.756
Pspc1 Mus musculus ENSMUSG00000021938 I 0.756
PSPC1 Loxodonta africana ENSLAFG00000010968 I 0.756
nono Xenopus tropicalis ENSXETG00000020868 I 0.756
PSPC1 Homo sapiens ENSG00000121390 I 0.756
PSPC1 Oryctolagus cuniculus ENSOCUG00000006153 I 0.756
PSPC1 Macaca mulatta ENSMMUG00000020262 I 0.756
PSPC1 Macropus eugenii ENSMEUG00000000476 I 0.756
PSPC1 Pan troglodytes ENSPTRG00000005677 I 0.756
PSPC1 Myotis lucifugus ENSMLUG00000017663 I 0.756
PSPC1 Monodelphis domestica ENSMODG00000008029 I 0.756
Ame_R014248 Ailuropoda melanoleuca Ame_R014248 I 0.756
ENSPPYG00000005186 Pongo pygmaeus ENSPPYG00000005186 I 0.756
ENSCPOG00000023605 Cavia porcellus ENSCPOG00000023605 I 0.750
NONO Sorex araneus ENSSARG00000007959 I 0.750
ENSCJAG00000035318 Callithrix jacchus ENSCJAG00000035318 I 0.748
PSPC1 Pteropus vampyrus ENSPVAG00000005036 I 0.748
SFPQ Macaca mulatta ENSMMUG00000019154 I 0.748
NONO Spermophilus tridecemlineatus ENSSTOG00000015869 I 0.744
ENSCJAG00000003136 Callithrix jacchus ENSCJAG00000003136 I 0.742
NONO Anolis carolinensis ENSACAG00000015026 I 0.733
pspc1 Danio rerio ENSDARG00000006621 N 0.733
PSPC1 Felis catus ENSFCAG00000013701 I 0.733
NONO Myotis lucifugus ENSMLUG00000002489 I 0.727
ENSMGAG00000004237 Meleagris gallopavo ENSMGAG00000004237 I 0.720
PSPC1 Dasypus novemcinctus ENSDNOG00000011078 N 0.718
nono Danio rerio ENSDARG00000020482 I 0.702