Hrb27C (Drosophila melanogaster)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 FBgn0004838 T42997_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
Hrb27C
M028_0.6		 Drosophila melanogaster UAGGWWA RNAcompete
Ray et al.(2013)
RNCMPT00028 		(Direct)
Hrb27C
M090_0.6		 Drosophila melanogaster UAGGWUA RNAcompete
Ray et al.(2013)
RNCMPT00093 		(Direct)

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

Experimental Constructs

Motif ID Domain From To Sequence
M028_0.6 RRM 9 78
M028_0.6 RRM 98 168
M090_0.6 RRM 9 78
M090_0.6 RRM 98 168

RNA Binding Domains

Protein ID Domain From To Sequence
FBpp0078974 RRM 9 78
FBpp0078974 RRM 98 168
FBpp0078975 RRM 9 78
FBpp0078975 RRM 98 168
FBpp0078976 RRM 9 78
FBpp0078976 RRM 98 168
FBpp0290617 RRM 9 78
FBpp0290617 RRM 98 168
FBpp0290618 RRM 9 78
FBpp0290618 RRM 98 168
FBpp0297873 RRM 9 78
FBpp0297873 RRM 98 168
FBpp0297874 RRM 9 78
FBpp0297874 RRM 98 168
FBpp0297875 RRM 9 78
FBpp0297875 RRM 98 168

Links

Other RRM family RBPs
Other Drosophila melanogaster RBPs

21 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Aqu1.200420 Amphimedon queenslandica Aqu1.200420 N 0.000
Aqu1.200683 Amphimedon queenslandica Aqu1.200683 N 0.000
Aqu1.200997 Amphimedon queenslandica Aqu1.200997 N 0.000
Aqu1.201112 Amphimedon queenslandica Aqu1.201112 N 0.000
Aqu1.201536 Amphimedon queenslandica Aqu1.201536 N 0.000
Aqu1.201624 Amphimedon queenslandica Aqu1.201624 N 0.000
Aqu1.201670 Amphimedon queenslandica Aqu1.201670 N 0.000
Aqu1.201766 Amphimedon queenslandica Aqu1.201766 N 0.000
Aqu1.203391 Amphimedon queenslandica Aqu1.203391 N 0.000
Aqu1.203950 Amphimedon queenslandica Aqu1.203950 N 0.000
Aqu1.208732 Amphimedon queenslandica Aqu1.208732 N 0.000
Aqu1.210879 Amphimedon queenslandica Aqu1.210879 N 0.000
Aqu1.211516 Amphimedon queenslandica Aqu1.211516 N 0.000
Aqu1.215609 Amphimedon queenslandica Aqu1.215609 N 0.000
Aqu1.217241 Amphimedon queenslandica Aqu1.217241 N 0.000
Aqu1.217817 Amphimedon queenslandica Aqu1.217817 N 0.000
Aqu1.219824 Amphimedon queenslandica Aqu1.219824 N 0.000
Aqu1.220316 Amphimedon queenslandica Aqu1.220316 N 0.000
Aqu1.220789 Amphimedon queenslandica Aqu1.220789 N 0.000
Minc19150 Meloidogyne incognita Minc19150 N 0.000
SPPG_03522 Spizellomyces punctatus SPPG_03522 N 0.000