Hrb27C (Drosophila melanogaster)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 FBgn0004838 T42997_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
Hrb27C
M028_0.6		 Drosophila melanogaster UAGGWWA RNAcompete
Ray et al.(2013)
RNCMPT00028 		(Direct)
Hrb27C
M090_0.6		 Drosophila melanogaster UAGGWUA RNAcompete
Ray et al.(2013)
RNCMPT00093 		(Direct)

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

Experimental Constructs

Motif ID Domain From To Sequence
M028_0.6 RRM 9 78
M028_0.6 RRM 98 168
M090_0.6 RRM 9 78
M090_0.6 RRM 98 168

RNA Binding Domains

Protein ID Domain From To Sequence
FBpp0078974 RRM 9 78
FBpp0078974 RRM 98 168
FBpp0078975 RRM 9 78
FBpp0078975 RRM 98 168
FBpp0078976 RRM 9 78
FBpp0078976 RRM 98 168
FBpp0290617 RRM 9 78
FBpp0290617 RRM 98 168
FBpp0290618 RRM 9 78
FBpp0290618 RRM 98 168
FBpp0297873 RRM 9 78
FBpp0297873 RRM 98 168
FBpp0297874 RRM 9 78
FBpp0297874 RRM 98 168
FBpp0297875 RRM 9 78
FBpp0297875 RRM 98 168

Links

Other RRM family RBPs
Other Drosophila melanogaster RBPs

21 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
GM16252 Drosophila sechellia FBgn0171168 I 0.993
GE14209 Drosophila yakuba FBgn0231830 I 0.993
GG10443 Drosophila erecta FBgn0102752 I 0.993
GK24781 Drosophila willistoni FBgn0226741 I 0.993
GA10287-RA Drosophila pseudoobscura FBgn0070345 I 0.993
Hrb27C Drosophila simulans FBgn0083432 I 0.993
GF15435 Drosophila ananassae FBgn0092460 I 0.993
GL26194 Drosophila persimilis FBgn0163776 I 0.986
GH13720 Drosophila grimshawi FBgn0121196 I 0.986
GJ21323 Drosophila virilis FBgn0208454 I 0.979
GI24040 Drosophila mojavensis FBgn0146763 I 0.972
amel4_ncbi_hmm9281 Apis mellifera amel4_ncbi_hmm9281 I 0.816
PHUM115070 Pediculus humanus PHUM115070 I 0.816
nasonia_NCBI_hmm120503 Nasonia vitripennis nasonia_NCBI_hmm120503 I 0.810
DGIL_AUG5s520g11t1 Acyrtosiphon pisum DGIL_AUG5s520g11t1 I 0.809
CPIJ015262 Culex quinquefasciatus CPIJ015262 I 0.794
AAEL008257 Aedes aegypti AAEL008257 I 0.794
CpipJ_CPIJ015262 Culex pipiens CpipJ_CPIJ015262 I 0.794
AGAP001930 Anopheles gambiae AGAP001930 I 0.745
estExt_fgenesh1_pg.C_230134 Daphnia pulex estExt_fgenesh1_pg.C_230134 I 0.738