XM_002879117.1 (Arabidopsis lyrata)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 fgenesh1_pm.C_scaffold_4000699 T44466_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
fgenesh1_pm.C_scaffold_4000699 RRM 111 189

Links

Other RRM family RBPs
Other Arabidopsis lyrata RBPs

23 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AT2G28540 Arabidopsis thaliana AT2G28540-TAIR-G N 0.987
AT3G45630 Arabidopsis thaliana AT3G45630-TAIR-G N 0.797
AT5G60170 Arabidopsis thaliana AT5G60170-TAIR-G N 0.759
cassava13567.valid.m1 Manihot esculenta cassava13567.valid.m1 N 0.810
cassava801.valid.m1 Manihot esculenta cassava801.valid.m1 N 0.835
cassava802.valid.m1 Manihot esculenta cassava802.valid.m1 N 0.835
Cucsa.051650 Cucumis sativus Cucsa.051650 N 0.734
XM_002864625.1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_8002022 N 0.759
XM_002877379.1 Arabidopsis lyrata fgenesh2_kg.5__939__AT3G45630.1 N 0.785
Glyma11g15670.1 Glycine max Glyma11g15670.1 N 0.772
Glyma12g07790.1 Glycine max Glyma12g07790.1 N 0.747
Glyma13g40460.1 Glycine max Glyma13g40460.1 N 0.772
Glyma15g04950.1 Glycine max Glyma15g04950.1 N 0.785
GSVIVG00025102001 Vitis vinifera GSVIVG00025102001 N 0.772
LjT39B13.150.nc Lotus japonicus LjT39B13.150.nc N 0.823
MDP0000296717 Malus x domestica MDP0000296717 N 0.797
Medtr2g111500 Medicago truncatula Medtr2g111500 N 0.810
Medtr4g080070 Medicago truncatula Medtr4g080070 N 0.772
mgf016286m Mimulus guttatus mgf016286m N 0.734
mgf016475m Mimulus guttatus mgf016475m N 0.709
PK08517.1 Cannabis sativa PK08517.1 N 0.734
B9HPP2_POPTR Populus trichocarpa POPTR_0009s03130 N 0.835
ppa000664m Prunus persica ppa000664m N 0.797