XM_002877379.1 (Arabidopsis lyrata)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 fgenesh2_kg.5__939__AT3G45630.1 T44556_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
fgenesh2_kg.5__939__AT3G45630.1 RRM 111 189

Links

Other RRM family RBPs
Other Arabidopsis lyrata RBPs

29 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AT3G45630 Arabidopsis thaliana AT3G45630-TAIR-G N 0.975
AT5G60170 Arabidopsis thaliana AT5G60170-TAIR-G N 0.924
XM_002864625.1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_8002022 N 0.924
B9HPP2_POPTR Populus trichocarpa POPTR_0009s03130 N 0.899
cassava801.valid.m1 Manihot esculenta cassava801.valid.m1 N 0.886
ppa000664m Prunus persica ppa000664m N 0.886
cassava802.valid.m1 Manihot esculenta cassava802.valid.m1 N 0.886
GSVIVG00025102001 Vitis vinifera GSVIVG00025102001 N 0.873
Cucsa.051650 Cucumis sativus Cucsa.051650 N 0.873
cassava13567.valid.m1 Manihot esculenta cassava13567.valid.m1 N 0.873
MDP0000296717 Malus x domestica MDP0000296717 N 0.861
LjT39B13.150.nc Lotus japonicus LjT39B13.150.nc N 0.835
Glyma12g07790.1 Glycine max Glyma12g07790.1 N 0.835
Glyma11g15670.1 Glycine max Glyma11g15670.1 N 0.835
Medtr2g111500 Medicago truncatula Medtr2g111500 N 0.823
Glyma15g04950.1 Glycine max Glyma15g04950.1 N 0.823
Glyma13g40460.1 Glycine max Glyma13g40460.1 N 0.810
Medtr4g080070 Medicago truncatula Medtr4g080070 N 0.810
PK08517.1 Cannabis sativa PK08517.1 N 0.797
mgf016286m Mimulus guttatus mgf016286m N 0.797
B9IIZ2_POPTR Populus trichocarpa POPTR_0016s08560 N 0.785
XM_002879117.1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_4000699 N 0.785
B9MT79_POPTR Populus trichocarpa POPTR_0006s13450 N 0.772
AT2G28540 Arabidopsis thaliana AT2G28540-TAIR-G N 0.772
ppa025065m Prunus persica ppa025065m N 0.759
MDP0000213471 Malus x domestica MDP0000213471 N 0.734
mgf016475m Mimulus guttatus mgf016475m N 0.734
cassava12926.valid.m1 Manihot esculenta cassava12926.valid.m1 N 0.722
cassava12925.valid.m1 Manihot esculenta cassava12925.valid.m1 N 0.722