CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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XM_002877379.1
(
Arabidopsis lyrata
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
fgenesh2_kg.5__939__AT3G45630.1
T44556_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
fgenesh2_kg.5__939__AT3G45630.1
RRM
111
189
VYIVGLPLNLADEDLLQRNEYFGQYGKVLKVSMSRTATGLIQQFPNNTCSVYITYGKEEEAVRCIQSVHGFILDGKALK
Links
Other
RRM
family RBPs
Other
Arabidopsis lyrata
RBPs
29 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
GF16214
Drosophila ananassae
FBgn0093236
N
0.000
GH22178
Drosophila grimshawi
FBgn0129639
N
0.000
GI21968
Drosophila mojavensis
FBgn0144697
N
0.000
GL13491
Drosophila persimilis
FBgn0151096
N
0.000
GJ14327
Drosophila virilis
FBgn0201541
N
0.000
GK14083
Drosophila willistoni
FBgn0216089
N
0.000