CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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B9HMF0_POPTR
(
Populus trichocarpa
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
POPTR_0008s05270
T45556_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
POPTR_0008s05270.1
RRM
2
56
QVIFSEVGDLLRCSLHYDMSGRSKGTAEVVFALQTDALAAIKRYNNVQLDGKPLK
Links
Other
RRM
family RBPs
Other
Populus trichocarpa
RBPs
5 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
LjSGA_065336.1
Lotus japonicus
LjSGA_065336.1
N
0.727
PDK_20s1300711g001
Phoenix dactylifera
PDK_20s1300711g001
N
0.745
PDK_20s130094197g001
Phoenix dactylifera
PDK_20s130094197g001
N
0.737
PDK_20s1328531g001
Phoenix dactylifera
PDK_20s1328531g001
N
0.745
PK26404.1
Cannabis sativa
PK26404.1
N
0.709