B9HIG1_POPTR (Populus trichocarpa)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 POPTR_0008s09710 T45561_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0008s09710.1 RRM 12 82

Links

Other RRM family RBPs
Other Populus trichocarpa RBPs

24 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
30174.m009088 Ricinus communis 30174.m009088 N 0.930
ATE1 Arabidopsis thaliana AT1G13690-TAIR-G N 0.915
BGIOSIBCE012002 Oryza indica BGIOSIBCE012002 N 0.901
BRADI1G15040 Brachypodium distachyon BRADI1G15040 N 0.887
cassava7442.valid.m1 Manihot esculenta cassava7442.valid.m1 N 0.915
Cucsa.327930 Cucumis sativus Cucsa.327930 N 0.930
estExt_Genemark1.C_190214 Coccomyxa C 169 estExt_Genemark1.C_190214 N 0.704
estExt_Genewise1.C_40283 Selaginella moellendorfii estExt_Genewise1.C_40283 N 0.761
estExt_Genewise1Plus.C_190263 Chlorella vulgaris estExt_Genewise1Plus.C_190263 N 0.704
XM_002889971.1 Arabidopsis lyrata fgenesh2_kg.1__1483__AT1G13690.1 N 0.915
Glyma01g07800.1 Glycine max Glyma01g07800.1 N 0.930
Glyma02g13280.1 Glycine max Glyma02g13280.1 N 0.944
GRMZM2G138572 Zea mays GRMZM2G138572 N 0.873
GSVIVG00010778001 Vitis vinifera GSVIVG00010778001 N 0.930
LOC_Os03g40310 Oryza sativa LOC_Os03g40310 N 0.901
MDP0000193642 Malus x domestica MDP0000193642 N 0.958
MDP0000219767 Malus x domestica MDP0000219767 N 0.944
MDP0000271129 Malus x domestica MDP0000271129 N 0.944
MDP0000319973 Malus x domestica MDP0000319973 N 0.958
MDP0000588137 Malus x domestica MDP0000588137 N 0.944
Medtr5g047590 Medicago truncatula Medtr5g047590 N 0.944
B9HXI2_POPTR Populus trichocarpa POPTR_0010s16450 N 0.873
ppa012381m Prunus persica ppa012381m N 0.958
SB01G015060 Sorghum bicolor Sb01g015060 N 0.873