B9HNK5_POPTR (Populus trichocarpa)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 POPTR_0009s07030 T45578_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0009s07030.1 RRM 81 151
POPTR_0009s07030.1 RRM 181 251

Links

Other RRM family RBPs
Other Populus trichocarpa RBPs

15 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
30152.m002412 Ricinus communis 30152.m002412 N 0.866
AT3G52150 Arabidopsis thaliana AT3G52150-TAIR-G N 0.775
BRADI4G27050 Brachypodium distachyon BRADI4G27050 N 0.739
cassava36538.valid.m1 Manihot esculenta cassava36538.valid.m1 N 0.901
XM_002876082.1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_5001705 N 0.732
Glyma08g16100.1 Glycine max Glyma08g16100.1 N 0.908
Glyma15g42610.1 Glycine max Glyma15g42610.1 N 0.894
GRMZM2G143870 Zea mays GRMZM2G143870 N 0.732
GSVIVG00032039001 Vitis vinifera GSVIVG00032039001 N 0.860
LOC_Os09g10760 Oryza sativa LOC_Os09g10760 N 0.732
MDP0000270177 Malus x domestica MDP0000270177 N 0.803
mgf011216m Mimulus guttatus mgf011216m N 0.824
PK21582.1 Cannabis sativa PK21582.1 N 0.866
ppa010401m Prunus persica ppa010401m N 0.838
SB02G018650 Sorghum bicolor Sb02g018650 N 0.718