CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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SB02G018650
(
Sorghum bicolor
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
Sb02g018650
T45926_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
Sb02g018650.1
RRM
69
139
LYVGNVPRTVTNDELRDMFAAHGTVERAEVMYDKYTNRSRRFGFVTMSTVEEANAAVEALNGTEVGGRKIK
Sb02g018650.1
RRM
168
238
VYVGNLAKNVTTEVLKNFFSEKGKILSATVSHIPGTSKSKGYGFVTFSSEEEVEAAVATFNNAELEGQPIR
Links
Other
RRM
family RBPs
Other
Sorghum bicolor
RBPs
10 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
GRMZM2G143870
Zea mays
GRMZM2G143870
N
0.958
LOC_Os09g10760
Oryza sativa
LOC_Os09g10760
N
0.873
BRADI4G27050
Brachypodium distachyon
BRADI4G27050
N
0.873
Glyma15g42610.1
Glycine max
Glyma15g42610.1
N
0.746
Glyma08g16100.1
Glycine max
Glyma08g16100.1
N
0.739
mgf011216m
Mimulus guttatus
mgf011216m
N
0.732
cassava36538.valid.m1
Manihot esculenta
cassava36538.valid.m1
N
0.732
30152.m002412
Ricinus communis
30152.m002412
N
0.725
B9HNK5_POPTR
Populus trichocarpa
POPTR_0009s07030
N
0.718
PK21582.1
Cannabis sativa
PK21582.1
N
0.704