CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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cip2
(
Schizosaccharomyces pombe
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
SPAC12G12.03
T46156_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
SPAC12G12.03-1
RRM
234
304
IVIKNIPFSLKKEVLFKVFTALDIPRPYAFNYHFDNGVFRGLAFANFHSPEEAKTVVQVLNGYEITGRRLR
Links
Other
RRM
family RBPs
Other
Schizosaccharomyces pombe
RBPs
14 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
ACR235W
Ashbya gossypii
ACR235W
N
0.718
Cd36_26480
Candida dubliniensis
Cd36_26480
N
0.704
CLUG_00283
Candida lusitaniae
CLUG_00283
N
0.718
CPAG_02687
Candida parapsilosis
CPAG_02687
N
0.704
CTRG_00938
Candida tropicalis
CTRG_00938
N
0.704
estExt_fgenesh1_pg.C_chr_8.10303
Pichia stipitis
estExt_fgenesh1_pg.C_chr_8.10303
N
0.718
KLLA0E19845g
Kluyveromyces lactis
KLLA0E19845g
N
0.718
LELG_00183
Lodderomyces elongisporus
LELG_00183
N
0.704
PIN4
Candida albicans
orf19.2534
N
0.704
PGUG_01669
Candida guilliermondii
PGUG_01669
N
0.704
SJAG_00563
Schizosaccharomyces japonicus
SJAG_00563
N
0.930
SOCG_00687
Schizosaccharomyces octosporus
SOCG_00687
N
0.972
SPOG_01811
Schizosaccharomyces cryophilus
SPOG_01811
N
0.986
XP_002491986.1
Pichia pastoris
XP_002491986.1
N
0.704