estExt_fgenesh1_pg.C_chr_8.10303 (Pichia stipitis)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 estExt_fgenesh1_pg.C_chr_8.10303 T50672_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
estExt_fgenesh1_pg.C_chr_8.10303 RRM 178 248

Links

Other RRM family RBPs
Other Pichia stipitis RBPs

63 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
CPAG_02687 Candida parapsilosis CPAG_02687 N 0.972
CLUG_00283 Candida lusitaniae CLUG_00283 N 0.972
CTRG_00938 Candida tropicalis CTRG_00938 N 0.972
PIN4 Candida albicans orf19.2534 N 0.958
Cd36_26480 Candida dubliniensis Cd36_26480 N 0.958
LELG_00183 Lodderomyces elongisporus LELG_00183 N 0.958
PGUG_01669 Candida guilliermondii PGUG_01669 N 0.930
DEHA0A07766g Debaryomyces hansenii DEHA0A07766g N 0.930
XP_002491986.1 Pichia pastoris XP_002491986.1 N 0.887
SAKL0F11924g Lachancea kluyveri SAKL0F11924g N 0.873
YALI0D15752g Yarrowia lipolytica YALI0D15752g N 0.859
KLLA0E19845g Kluyveromyces lactis KLLA0E19845g N 0.845
ACR235W Ashbya gossypii ACR235W N 0.845
Kwal_14810 Kluyveromyces waltii Kwal_14810 N 0.845
ZYRO0B02860g Zygosaccharomyces rouxii ZYRO0B02860g N 0.831
Scas_Contig500.6 Saccharomyces castellii Scas_Contig500.6 N 0.817
KLTH0B04950g Kluyveromyces thermotolerans KLTH0B04950g N 0.817
A7TMV9_VANPO Vanderwaltozyma polyspora A7TMV9_VANPO N 0.803
AFUA_5G01940 Aspergillus fumigatus CADAFUAG00002843 N 0.789
AFLA_025070 Aspergillus flavus CADAFLAG00001883 N 0.789
NFIA_040180 Neosartorya fischeri CADNFIAG00003684 N 0.789
AO090003001325 Aspergillus oryzae CADAORAG00001849 N 0.789
ATEG_09814 Aspergillus terreus CADATEAG00005663 N 0.789
ANIA_08038 Aspergillus nidulans CADANIAG00004059 N 0.789
fgenesh1_pm.00168_#_115 Aspergillus carbonarius fgenesh1_pm.00168_#_115 N 0.789
An16g01800 Aspergillus niger CADANGAG00012651 N 0.789
Pc21g14530 Penicillium chrysogenum Pc21g14530 N 0.789
PABG_00017 Paracoccidioides brasiliensis PABG_00017 N 0.775
TEQG_06159 Trichophyton equinum TEQG_06159 N 0.775
1510_YBL051C Saccharomyces mikatae 1510_YBL051C N 0.775
TERG_04408 Trichophyton rubrum TERG_04408 N 0.775
ACLA_003320 Aspergillus clavatus CADACLAG00000413 N 0.775
MGYG_04073 Microsporum gypseum MGYG_04073 N 0.775
TRV_07498 Trichophyton verrucosum TRV_07498 N 0.775
TESG_06836 Trichophyton tonsurans TESG_06836 N 0.775
MCYG_02010 Microsporum canis MCYG_02010 N 0.775
GSTUMT00005304001 Tuber melanosporum GSTUMT00005304001 N 0.775
PMAA_039640 Penicillium marneffei PMAA_039640 N 0.775
ARB_00840 Arthroderma benhamiae ARB_00840 N 0.775
BDBG_02675 Blastomyces dermatitidis BDBG_02675 N 0.775
HCAG_04905 Histoplasma capsulatum HCAG_04905 N 0.775
539_YBL051C Saccharomyces paradoxus 539_YBL051C N 0.761
Skud_Contig1725.4 Saccharomyces kudriavzevii Skud_Contig1725.4 N 0.761
CPSG_00675 Coccidioides posadasii CPSG_00675 N 0.761
1078_YHR132C Saccharomyces bayanus 1078_YHR132C N 0.761
CIMG_06397 Coccidioides immitis CIMG_06397 N 0.761
PIN4 Saccharomyces cerevisiae YBL051C N 0.761
CAGL0A04213g Candida glabrata CAGL0A04213g N 0.746
AB09303.1 Alternaria brassicicola AB09303.1 N 0.746
CAGL0I05082g Candida glabrata CAGL0I05082g N 0.746
EAT83231.2 Phaeosphaeria nodorum EAT83231.2 N 0.746
SNOG_09039 Stagonospora nodorum SNOG_09039 N 0.746
PTRG_00597 Pyrenophora tritici repentis PTRG_00597 N 0.746
estExt_fgenesh1_pm.C_190004 Cochliobolus heterostrophus C5 estExt_fgenesh1_pm.C_190004 N 0.746
A7TQD0_VANPO Vanderwaltozyma polyspora A7TQD0_VANPO N 0.746
UREG_04006 Uncinocarpus reesii UREG_04006 N 0.746
estExt_fgenesh1_pg.C_chr_80368 Mycosphaerella graminicola estExt_fgenesh1_pg.C_chr_80368 N 0.732
e_gw1.5.456.1 Mycosphaerella fijiensis e_gw1.5.456.1 N 0.732
cip2 Schizosaccharomyces pombe SPAC12G12.03 N 0.718
SOCG_00687 Schizosaccharomyces octosporus SOCG_00687 N 0.704
SS1G_02057 Sclerotinia sclerotiorum SS1G_02057 N 0.704
SPOG_01811 Schizosaccharomyces cryophilus SPOG_01811 N 0.704
SJAG_00563 Schizosaccharomyces japonicus SJAG_00563 N 0.704