cassava23957.valid.m1 (Manihot esculenta)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 cassava23957.valid.m1 T49208_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
cassava23957.valid.m1 RRM 6 71

Links

Other RRM family RBPs
Other Manihot esculenta RBPs

21 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
30072.m000978 Ricinus communis 30072.m000978 N 0.838
AT5G32450 Arabidopsis thaliana AT5G32450-TAIR-G N 0.836
cassava22591.valid.m1 Manihot esculenta cassava22591.valid.m1 N 0.924
cassava22592.valid.m1 Manihot esculenta cassava22592.valid.m1 N 0.924
cassava25979.m1 Manihot esculenta cassava25979.m1 N 0.924
Cucsa.017340 Cucumis sativus Cucsa.017340 N 0.881
Cucsa.334810 Cucumis sativus Cucsa.334810 N 0.833
XM_002868345.1 Arabidopsis lyrata fgenesh2_kg.7__3000__AT5G32450.1 N 0.836
Glyma16g04290.1 Glycine max Glyma16g04290.1 N 0.821
GRMZM2G172011 Zea mays GRMZM2G172011 N 0.706
GSVIVG00022464001 Vitis vinifera GSVIVG00022464001 N 0.836
MDP0000120510 Malus x domestica MDP0000120510 N 0.851
Medtr7g102810 Medicago truncatula Medtr7g102810 N 0.809
mgf006334m Mimulus guttatus mgf006334m N 0.851
PDK_20s1386251g001 Phoenix dactylifera PDK_20s1386251g001 N 0.758
PK10346.1 Cannabis sativa PK10346.1 N 0.924
B9I5V6_POPTR Populus trichocarpa POPTR_0013s05190 N 0.879
B9IPS4_POPTR Populus trichocarpa POPTR_0019s05350 N 0.866
ppa009644m Prunus persica ppa009644m N 0.894
ppa009902m Prunus persica ppa009902m N 0.894
SB01G008070 Sorghum bicolor Sb01g008070 N 0.706