cassava22591.valid.m1 (Manihot esculenta)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 cassava22591.valid.m1 T49190_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
cassava22591.valid.m1 RRM 55 119

Links

Other RRM family RBPs
Other Manihot esculenta RBPs

19 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
cassava22592.valid.m1 Manihot esculenta cassava22592.valid.m1 N 1.000
cassava25979.m1 Manihot esculenta cassava25979.m1 N 1.000
cassava23957.valid.m1 Manihot esculenta cassava23957.valid.m1 N 0.924
PK10346.1 Cannabis sativa PK10346.1 N 0.879
ppa009644m Prunus persica ppa009644m N 0.879
ppa009902m Prunus persica ppa009902m N 0.879
B9IPS4_POPTR Populus trichocarpa POPTR_0019s05350 N 0.866
B9I5V6_POPTR Populus trichocarpa POPTR_0013s05190 N 0.848
MDP0000120510 Malus x domestica MDP0000120510 N 0.836
Glyma16g04290.1 Glycine max Glyma16g04290.1 N 0.821
mgf006334m Mimulus guttatus mgf006334m N 0.821
Cucsa.017340 Cucumis sativus Cucsa.017340 N 0.821
30072.m000978 Ricinus communis 30072.m000978 N 0.809
XM_002868345.1 Arabidopsis lyrata fgenesh2_kg.7__3000__AT5G32450.1 N 0.806
AT5G32450 Arabidopsis thaliana AT5G32450-TAIR-G N 0.806
Medtr7g102810 Medicago truncatula Medtr7g102810 N 0.794
GSVIVG00022464001 Vitis vinifera GSVIVG00022464001 N 0.791
Cucsa.334810 Cucumis sativus Cucsa.334810 N 0.773
PDK_20s1386251g001 Phoenix dactylifera PDK_20s1386251g001 N 0.742