cassava24157.valid.m1 (Manihot esculenta)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 cassava24157.valid.m1 T49212_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
cassava24157.valid.m1 RRM 277 338

Links

Other RRM family RBPs
Other Manihot esculenta RBPs

20 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
30075.m001186 Ricinus communis 30075.m001186 N 0.859
DRT111 Arabidopsis thaliana AT1G30480-TAIR-G N 0.810
BGIOSIBCE002155 Oryza indica BGIOSIBCE002155 N 0.703
cassava31871.valid.m1 Manihot esculenta cassava31871.valid.m1 N 0.812
chr4.CM0229.230.nc Lotus japonicus chr4.CM0229.230.nc N 0.857
Cucsa.048210 Cucumis sativus Cucsa.048210 N 0.905
estExt_fgenesh1_pg.C_2810007 Physcomitrella patens estExt_fgenesh1_pg.C_2810007 N 0.797
XM_002890828.1 Arabidopsis lyrata fgenesh2_kg.1__3230__AT1G30480.1 N 0.810
Glyma07g35050.1 Glycine max Glyma07g35050.1 N 0.873
Glyma20g02910.1 Glycine max Glyma20g02910.1 N 0.889
GRMZM2G003527 Zea mays GRMZM2G003527 N 0.714
GRMZM2G145034 Zea mays GRMZM2G145034 N 0.000
GSVIVG00021628001 Vitis vinifera GSVIVG00021628001 N 0.844
LOC_Os01g34190 Oryza sativa LOC_Os01g34190 N 0.703
MDP0000162585 Malus x domestica MDP0000162585 N 0.844
Medtr4g115110 Medicago truncatula Medtr4g115110 N 0.873
mgf008467m Mimulus guttatus mgf008467m N 0.000
PDK_20s1603131g002 Phoenix dactylifera PDK_20s1603131g002 N 0.797
PK13606.1 Cannabis sativa PK13606.1 N 0.857
B9GGD6_POPTR Populus trichocarpa POPTR_0001s38150 N 0.875
ppa007087m Prunus persica ppa007087m N 0.859