CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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e_gw1.14.113.1
(
Trichoplax adhaerens
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
e_gw1.14.113.1
T49773_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
PABPN1
M148_0.6
Homo sapiens
ARAAGA
RNAcompete
Ray et al.(2013)
RNCMPT00157
0.900
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
e_gw1.14.113.1
RRM
13
82
VYVGNVDYAATAEELEQHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVKTAMALDDSLFRGRQIK
Links
Other
RRM
family RBPs
Other
Trichoplax adhaerens
RBPs
104 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
Aqu1.200420
Amphimedon queenslandica
Aqu1.200420
N
0.000
Aqu1.200997
Amphimedon queenslandica
Aqu1.200997
N
0.000
Aqu1.201112
Amphimedon queenslandica
Aqu1.201112
N
0.000
Aqu1.201536
Amphimedon queenslandica
Aqu1.201536
N
0.000
Aqu1.201624
Amphimedon queenslandica
Aqu1.201624
N
0.000
Aqu1.201670
Amphimedon queenslandica
Aqu1.201670
N
0.000
Aqu1.201766
Amphimedon queenslandica
Aqu1.201766
N
0.000
Aqu1.203391
Amphimedon queenslandica
Aqu1.203391
N
0.000
Aqu1.206537
Amphimedon queenslandica
Aqu1.206537
N
0.000
Aqu1.208732
Amphimedon queenslandica
Aqu1.208732
N
0.000
Aqu1.210879
Amphimedon queenslandica
Aqu1.210879
N
0.000
Aqu1.211516
Amphimedon queenslandica
Aqu1.211516
N
0.000
Aqu1.215609
Amphimedon queenslandica
Aqu1.215609
N
0.000
Aqu1.217241
Amphimedon queenslandica
Aqu1.217241
N
0.000
Aqu1.217817
Amphimedon queenslandica
Aqu1.217817
N
0.000
Aqu1.220316
Amphimedon queenslandica
Aqu1.220316
N
0.000
Aqu1.220789
Amphimedon queenslandica
Aqu1.220789
N
0.000