CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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fgenesh1_pm.C_scaffold_4000255
(
Neurospora tetrasperma
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
fgenesh1_pm.C_scaffold_4000255
T52081_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
fgenesh1_pm.C_scaffold_4000255
RRM
257
322
VYIRGLHPTTDDELLLRYASRFGKVEQSKAIIDTSTGACKGFGFAKFANVRDSEKCIRGFHHLGYE
fgenesh1_pm.C_scaffold_4000255
RRM
345
410
LYLSNLPKRLTEAELNAIFVGYHIVSSKILRDSMGNSRGVGFARFETRDECEDVIKKFHGAPIGEE
Links
Other
RRM
family RBPs
Other
Neurospora tetrasperma
RBPs
15 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
PHUM241330
Pediculus humanus
PHUM241330
I
0.000
XP_001178647.1
Strongylocentrotus purpuratus
XP_001178647.1
N
0.000
XP_789638.1
Strongylocentrotus purpuratus
XP_789638.1
N
0.000
XP_789661.1
Strongylocentrotus purpuratus
XP_789661.1
N
0.000