CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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PDCD11
(
Tursiops truncatus
)
S1
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00575 (S1)
IPR003029
ENSTTRG00000003356
T60581_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSTTRP00000003151
S1
184
259
ALKPGMLLTGTVSSLEDHGYLVDIGVSGARAFLPLQKAQEYIQQKNKGAKLKVGHYLNCLIEEVKGNGGIVSLSVG
ENSTTRP00000003151
S1
279
347
LLPGLVVKAQVQKVTPFGLTLKFLSFFTGLVDFMHLDPKKGRTYFSNQPVRACVLCVHPRTRAVRLSLR
ENSTTRP00000003151
S1
450
523
DIKPGALVKGKVMTIKPYGMLVKVGRQIRALVPPMHLADILMKNPVKKYHVGDEVKCRVLLCDPEARKLMMTLK
ENSTTRP00000003151
S1
542
612
PGLQTHGFILRVKDYGCIVKFYNDVQGLVPRHELSAEYIPDPESVFYTGQVVKVAVLNCEPSKERMLLSFK
ENSTTRP00000003151
S1
632
688
INAGQLVDVKVLEKTKDGLQVAVLPHNIPGFLPTSHLSDHVTNGPLLHCWLQAGDTL
ENSTTRP00000003151
S1
724
797
EIHPGMLLIGFVKNIKDYGVFVQFPSGLSGLAPKAIMSDKFVTSTSDHFVEGQTVVAKVTNVDEEKQRMLLSLR
ENSTTRP00000003151
S1
1031
1099
TLSIGDMVTGTVKSIKPTHVVVTLEDGIIGCIHASHILDDVPVGTSPTAKLKVGKKVTARVIGGRDMKT
ENSTTRP00000003151
S1
1219
1281
KLEKGEVAMGRVVKVLPKEGLTVSFPFGKIGRVSIFHVSDSYSETPLENFTPQKIVRCYVLSA
ENSTTRP00000003151
S1
1313
1388
DIEEGQLLRGYVKSVQPSGVLLGLGPSVTGLAQYPHVSQYSLSKDAPYDRYLPEGKLLTAKVLSLNRRENLVELSI
Links
Other
S1
family RBPs
Other
Tursiops truncatus
RBPs
3 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
LOC784933
Bos taurus
ENSBTAG00000032779
N
0.737
PDCD11
Felis catus
ENSFCAG00000002384
N
0.722
PDCD11
Oryctolagus cuniculus
ENSOCUG00000006312
N
0.706