CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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PDCD11
(
Felis catus
)
S1
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00575 (S1)
IPR003029
ENSFCAG00000002384
T60354_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSFCAP00000002199
S1
183
258
ALKPGMLLTGTVSSLEDHGYLVDIGVGGARAFLPLQKAHEYIRQKNKGAEMKVGHYLNCVIEEVKGNGGVVGLSIG
ENSFCAP00000002199
S1
278
346
LLPGLVVKAQVQKVTPHGLILNFLSFFTGLVDFMHLDPKKAGTYFSNQTVRACVLCVHPRTRAVRLSLR
ENSFCAP00000002199
S1
449
522
DIKPGALVKGTVLTIKPYGMLVKVGEQIRGLVPPIHLADILIKNPEKKYHIGDEVKCRVLLCDPEAKKLMMTLK
ENSFCAP00000002199
S1
541
611
PGLQTHGFILRVKDYGCIVKFYNDVQGLVPKHELSAEYVPDPERVFYTGQVVKVAVLNCEPSKERMLLSFK
ENSFCAP00000002199
S1
631
687
VSVGQLVDVKVLEKTKDGLEVAVLPHNVPAFLPIPHLSDHVANGPLLYHWLQAGDIL
ENSFCAP00000002199
S1
723
791
EIHPGMLLIGFVKSIKDYGVFVQFPSGLSGIMSDKFVTSTSDHFVEGQTVVAKVTNVDEEKQRMLLSLR
ENSFCAP00000002199
S1
1025
1093
TLSIGDMVTGTVKSIKPTHVVVTLEDGIIGCIHASHILDDVPVGTSPTAKLKVGKTVTARVIGGRDMKT
ENSFCAP00000002199
S1
1153
1216
YNVVKKWLEVEIAPDIRGRIPLLLTSLSFKVLKHPDKKFRIGQALKATVVGPDSSKAFLCLSLI
ENSFCAP00000002199
S1
1220
1284
KLEKGEVAMGRVVKVTPKEGLTVSFPFGKMGTVSIFHVSDSYSEMPLEDFIPQKVVRCYVLSATD
Links
Other
S1
family RBPs
Other
Felis catus
RBPs
4 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
LOC100397686
Callithrix jacchus
ENSCJAG00000018257
N
0.854
LOC784933
Bos taurus
ENSBTAG00000032779
N
0.735
PDCD11
Tursiops truncatus
ENSTTRG00000003356
N
0.722
PDCD11
Oryctolagus cuniculus
ENSOCUG00000006312
N
0.714