CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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LOC784933
(
Bos taurus
)
S1
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00575 (S1)
IPR003029
ENSBTAG00000032779
T60264_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSBTAP00000012819
S1
83
137
LCEGMRILGCVKEVNELELAISLPNGLQGYVQVTEICDAYTEKLNEQVAQEEPLQ
ENSBTAP00000012819
S1
186
261
TLKPGMLLTGTVSSLEDHGYLVDIGVSGARAFLPLQKAQEYIRQKNKGAKLKVGQYLNCLIEEVKGSRGVVTLSIG
ENSBTAP00000012819
S1
281
349
LLPGLVVKAQVQKVTPLGLTLKFLSFFSGLVDFMHLDPKKAGTYFSNQQVRACVLCVHPRTRAVRLSLR
ENSBTAP00000012819
S1
452
525
DIKPGALVKGKVLTIKPHGMVVKMGKQIRGLVPTMHLADILIKNPEKKYHVGDEVKCRVLLCDPKAKKLMMTLK
ENSBTAP00000012819
S1
544
614
PGLQTHGFILRVKDYGCIVKFYNDVQGLVPRHELSAEYVPDPESVFYTGQVVKVVVLNCEPSKERMLLSFR
ENSBTAP00000012819
S1
634
694
VSAGQLVDVKVLEKTKDGLKVAVLPHNIPGFLPTAHLSDHVTNGPLLYHWLQTGDTLHRVL
ENSBTAP00000012819
S1
726
799
EIHPGMLLIGFVKNIKDYGVFVQFPSGLSGLAPKAILSDKFVTSTSDHFVEGQTVVAKVTNVDEEKQRMLLSLR
ENSBTAP00000012819
S1
1033
1101
TLSIGDVVTGTVKSIKPTHVVVTLEDGIIGCIHASHILDDVPVGTSPTAKLKVGKKVTARVIGGRDMKT
ENSBTAP00000012819
S1
1231
1293
KLKKGEVAMGRVVKVTPKEGLTVSFPFGRVGRVSMFHVSDSYSETHLEDFVPQQVVRCYVLSA
ENSBTAP00000053435
S1
80
134
LCEGMRILGCVKEVNELELAISLPNGLQGYVQVTEICDAYTEKLNEQVAQEEPLQ
ENSBTAP00000053435
S1
183
258
TLKPGMLLTGTVSSLEDHGYLVDIGVSGARAFLPLQKAQEYIRQKNKGAKLKVGQYLNCLIEEVKGSRGVVTLSIG
ENSBTAP00000053435
S1
278
346
LLPGLVVKAQVQKVTPLGLTLKFLSFFSGLVDFMHLDPKKAGTYFSNQQVRACVLCVHPRTRAVRLSLR
ENSBTAP00000053435
S1
449
522
DIKPGALVKGKVLTIKPHGMVVKMGKQIRGLVPTMHLADILIKNPEKKYHVGDEVKCRVLLCDPKAKKLMMTLK
ENSBTAP00000053435
S1
541
611
PGLQTHGFILRVKDYGCIVKFYNDVQGLVPRHELSAEYVPDPESVFYTGQVVKVVVLNCEPSKERMLLSFR
ENSBTAP00000053435
S1
631
691
VSAGQLVDVKVLEKTKDGLKVAVLPHNIPGFLPTAHLSDHVTNGPLLYHWLQTGDTLHRVL
ENSBTAP00000053435
S1
723
796
EIHPGMLLIGFVKNIKDYGVFVQFPSGLSGLAPKAILSDKFVTSTSDHFVEGQTVVAKVTNVDEEKQRMLLSLR
ENSBTAP00000053435
S1
1030
1098
TLSIGDVVTGTVKSIKPTHVVVTLEDGIIGCIHASHILDDVPVGTSPTAKLKVGKKVTARVIGGRDMKT
ENSBTAP00000053435
S1
1226
1288
KLKKGEVAMGRVVKVTPKEGLTVSFPFGRVGRVSMFHVSDSYSETHLEDFVPQQVVRCYVLSA
Links
Other
S1
family RBPs
Other
Bos taurus
RBPs
5 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
PDCD11
Oryctolagus cuniculus
ENSOCUG00000006312
N
0.845
PDCD11
Ochotona princeps
ENSOPRG00000010593
N
0.828
PDCD11
Tursiops truncatus
ENSTTRG00000003356
N
0.737
PDCD11
Felis catus
ENSFCAG00000002384
N
0.735