14519 (Aureococcus anophagefferens)
CCCH ZF,RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH)
PF00076 (RRM_1) 		IPR000571
IPR000504 		14519 T00812_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
14519 CCCH ZF 12 38
14519 RRM 81 139
14519 CCCH ZF 148 173

Links

Other CCCH ZF,RRM family RBPs
Other Aureococcus anophagefferens RBPs

18 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
PITG_05688 Phytophthora infestans PITG_05688 N 0.777
ppa008459m Prunus persica ppa008459m N 0.714
MDP0000640144 Malus x domestica MDP0000640144 N 0.705
MDP0000179037 Malus x domestica MDP0000179037 N 0.714
fgenesh1_kg.1_#_193_#_3831_1_CBOZ_CBPA Coccomyxa C 169 fgenesh1_kg.1_#_193_#_3831_1_CBOZ_CBPA N 0.705
estExt_fgeneshCV_kg.C_10018 Chlorella vulgaris estExt_fgeneshCV_kg.C_10018 N 0.705
estExt_fgenesh1_kg.C_153200001 Phytophthora capsici estExt_fgenesh1_kg.C_153200001 N 0.777
s_458600 Phytophthora sojae s_458600 N 0.786
mgf010816m Mimulus guttatus mgf010816m N 0.714
gwEuk.2.46.1 Phytophthora ramorum gwEuk.2.46.1 N 0.786
gw1.15.161.1 Physcomitrella patens gw1.15.161.1 N 0.714
Glyma12g30590.1 Glycine max Glyma12g30590.1 N 0.705
fgenesh1_pm.C_scaffold_1000024 Selaginella moellendorfii fgenesh1_pm.C_scaffold_1000024 N 0.741
estExt_gwp_gw1.C_2150084 Physcomitrella patens estExt_gwp_gw1.C_2150084 N 0.714
estExt_Genewise1Plus.C_140110 Micromonas pusilla estExt_Genewise1Plus.C_140110 N 0.705
POPTR_0006s11790 Populus trichocarpa POPTR_0006s11790 N 0.705
GSVIVG00033771001 Vitis vinifera GSVIVG00033771001 N 0.705
ppa025949m Prunus persica ppa025949m N 0.705