POPTR_0006s11790 (Populus trichocarpa)
CCCH ZF,RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH)
PF00076 (RRM_1) 		IPR000571
IPR000504 		POPTR_0006s11790 T00750_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0006s11790.1 CCCH ZF 13 39
POPTR_0006s11790.1 RRM 84 142
POPTR_0006s11790.1 CCCH ZF 151 176

Links

Other CCCH ZF,RRM family RBPs
Other Populus trichocarpa RBPs

75 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
cassava12245.valid.m1 Manihot esculenta cassava12245.valid.m1 N 0.982
GSVIVG00033771001 Vitis vinifera GSVIVG00033771001 N 0.982
29092.m000448 Ricinus communis 29092.m000448 N 0.982
cassava12246.valid.m1 Manihot esculenta cassava12246.valid.m1 N 0.982
Cucsa.083100 Cucumis sativus Cucsa.083100 N 0.973
cassava30765.valid.m1 Manihot esculenta cassava30765.valid.m1 N 0.973
cassava30766.valid.m1 Manihot esculenta cassava30766.valid.m1 N 0.973
cassava34088.m1 Manihot esculenta cassava34088.m1 N 0.973
LjB15A13.120.nd Lotus japonicus LjB15A13.120.nd N 0.955
Glyma12g30590.1 Glycine max Glyma12g30590.1 N 0.955
MDP0000284705 Malus x domestica MDP0000284705 N 0.955
MDP0000179037 Malus x domestica MDP0000179037 N 0.955
ppa008459m Prunus persica ppa008459m N 0.955
ppa025949m Prunus persica ppa025949m N 0.946
Glyma03g34840.1 Glycine max Glyma03g34840.1 N 0.946
Glyma19g37530.1 Glycine max Glyma19g37530.1 N 0.946
MDP0000640144 Malus x domestica MDP0000640144 N 0.946
chr1.CM0378.200.nd Lotus japonicus chr1.CM0378.200.nd N 0.920
mgf010816m Mimulus guttatus mgf010816m N 0.911
fgenesh1_pm.C_scaffold_1000024 Selaginella moellendorfii fgenesh1_pm.C_scaffold_1000024 N 0.902
mgf004170m Mimulus guttatus mgf004170m N 0.893
mgf003009m Mimulus guttatus mgf003009m N 0.893
mgf001260m Mimulus guttatus mgf001260m N 0.893
cassava13474.valid.m1 Manihot esculenta cassava13474.valid.m1 N 0.893
B9MYK3_POPTR Populus trichocarpa POPTR_0004s20030 N 0.890
XM_002877317.1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_5000707 N 0.884
chr3.CM0396.90.nc Lotus japonicus chr3.CM0396.90.nc N 0.875
gw1.15.161.1 Physcomitrella patens gw1.15.161.1 N 0.875
estExt_gwp_gw1.C_2150084 Physcomitrella patens estExt_gwp_gw1.C_2150084 N 0.875
cassava23933.valid.m1 Manihot esculenta cassava23933.valid.m1 N 0.857
ATU2AF35A Arabidopsis thaliana AT1G27650-TAIR-G N 0.848
XM_002890695.1 Arabidopsis lyrata fgenesh2_kg.1__2923__AT1G27650.1 N 0.848
PDK_20s1490591g003 Phoenix dactylifera PDK_20s1490591g003 N 0.848
BGIOSIBCE030417 Oryza indica BGIOSIBCE030417 N 0.848
LOC_Os09g31482 Oryza sativa LOC_Os09g31482 N 0.848
Cucsa.200060 Cucumis sativus Cucsa.200060 N 0.847
B9H5X4_POPTR Populus trichocarpa POPTR_0005s27940 N 0.839
30170.m013808 Ricinus communis 30170.m013808 N 0.839
Sb02g028540 Sorghum bicolor Sb02g028540 N 0.839
Cucsa.272480 Cucumis sativus Cucsa.272480 N 0.839
29991.m000639 Ricinus communis 29991.m000639 N 0.832
estExt_Genewise1Plus.C_140110 Micromonas pusilla estExt_Genewise1Plus.C_140110 N 0.830
Glyma07g20090.1 Glycine max Glyma07g20090.1 N 0.830
XM_002863687.1 Arabidopsis lyrata fgenesh2_kg.8__553__AT5G42820.1 N 0.830
MDP0000321343 Malus x domestica MDP0000321343 N 0.830
U2AF35B Arabidopsis thaliana AT5G42820-TAIR-G N 0.830
GRMZM2G177229 Zea mays GRMZM2G177229 N 0.821
GRMZM2G031827 Zea mays GRMZM2G031827 N 0.821
SB03G030670 Sorghum bicolor Sb03g030670 N 0.821
SB09G028530 Sorghum bicolor Sb09g028530 N 0.821
GRMZM2G020928 Zea mays GRMZM2G020928 N 0.821
mgf001805m Mimulus guttatus mgf001805m N 0.821
GRMZM2G025014 Zea mays GRMZM2G025014 N 0.821
BGIOSIBCE020024 Oryza indica BGIOSIBCE020024 N 0.812
BRADI2G16520 Brachypodium distachyon BRADI2G16520 N 0.812
LOC_Os05g48960 Oryza sativa LOC_Os05g48960 N 0.812
BRADI4G33870 Brachypodium distachyon BRADI4G33870 N 0.812
fgenesh1_kg.1_#_193_#_3831_1_CBOZ_CBPA Coccomyxa C 169 fgenesh1_kg.1_#_193_#_3831_1_CBOZ_CBPA N 0.804
estExt_fgeneshCV_kg.C_10018 Chlorella vulgaris estExt_fgeneshCV_kg.C_10018 N 0.804
BRADI2G46080 Brachypodium distachyon BRADI2G46080 N 0.795
Chlre2_kg.scaffold_3000449 Chlamydomonas reinhardtii Chlre2_kg.scaffold_3000449 N 0.795
estExt_Genewise1Plus.C_470052 Volvox carteri estExt_Genewise1Plus.C_470052 N 0.786
gwEuk.2.46.1 Phytophthora ramorum gwEuk.2.46.1 N 0.750
GRMZM2G162119 Zea mays GRMZM2G162119 N 0.750
B9GPM3_POPTR Populus trichocarpa POPTR_0002s00480 N 0.742
s_458600 Phytophthora sojae s_458600 N 0.741
PITG_05688 Phytophthora infestans PITG_05688 N 0.741
estExt_fgenesh1_kg.C_153200001 Phytophthora capsici estExt_fgenesh1_kg.C_153200001 N 0.741
e_gw1.11.331.1 Ostreococcus RCC809 e_gw1.11.331.1 N 0.733
fgenesh1_pm.C_Chr_15000025 Ostreococcus lucimarinus fgenesh1_pm.C_Chr_15000025 N 0.730
Glyma20g00950.1 Glycine max Glyma20g00950.1 N 0.730
Medtr1g039850 Medicago truncatula Medtr1g039850 N 0.728
estExt_fgenesh3_pg.C_90081 Chlorella NC64A estExt_fgenesh3_pg.C_90081 N 0.725
1600010121 Ostreococcus tauri 1600010121 N 0.707
14519 Aureococcus anophagefferens 14519 N 0.705