estExt_fgenesh1_kg.C_153200001 (Phytophthora capsici)
CCCH ZF,RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH)
PF00076 (RRM_1) 		IPR000571
IPR000504 		estExt_fgenesh1_kg.C_153200001 T01063_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
estExt_fgenesh1_kg.C_153200001 CCCH ZF 67 93
estExt_fgenesh1_kg.C_153200001 RRM 136 194
estExt_fgenesh1_kg.C_153200001 CCCH ZF 203 228

Links

Other CCCH ZF,RRM family RBPs
Other Phytophthora capsici RBPs

60 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
PITG_05688 Phytophthora infestans PITG_05688 N 0.991
s_458600 Phytophthora sojae s_458600 N 0.991
gwEuk.2.46.1 Phytophthora ramorum gwEuk.2.46.1 N 0.964
SPRG_07523 Saprolegnia parasitica SPRG_07523 N 0.795
14519 Aureococcus anophagefferens 14519 N 0.777
estExt_Genewise1Plus.C_140110 Micromonas pusilla estExt_Genewise1Plus.C_140110 N 0.750
fgenesh1_pm.C_scaffold_1000024 Selaginella moellendorfii fgenesh1_pm.C_scaffold_1000024 N 0.750
mgf010816m Mimulus guttatus mgf010816m N 0.741
Cucsa.083100 Cucumis sativus Cucsa.083100 N 0.741
cassava13474.valid.m1 Manihot esculenta cassava13474.valid.m1 N 0.741
GSVIVG00033771001 Vitis vinifera GSVIVG00033771001 N 0.741
estExt_Genewise1Plus.C_470052 Volvox carteri estExt_Genewise1Plus.C_470052 N 0.741
estExt_gwp_gw1.C_2150084 Physcomitrella patens estExt_gwp_gw1.C_2150084 N 0.741
ppa008459m Prunus persica ppa008459m N 0.741
gw1.15.161.1 Physcomitrella patens gw1.15.161.1 N 0.741
MDP0000179037 Malus x domestica MDP0000179037 N 0.741
POPTR_0006s11790 Populus trichocarpa POPTR_0006s11790 N 0.741
cassava12246.valid.m1 Manihot esculenta cassava12246.valid.m1 N 0.732
Glyma12g30590.1 Glycine max Glyma12g30590.1 N 0.732
LjB15A13.120.nd Lotus japonicus LjB15A13.120.nd N 0.732
Chlre2_kg.scaffold_3000449 Chlamydomonas reinhardtii Chlre2_kg.scaffold_3000449 N 0.732
cassava12245.valid.m1 Manihot esculenta cassava12245.valid.m1 N 0.732
GRMZM2G025014 Zea mays GRMZM2G025014 N 0.723
B9H5X4_POPTR Populus trichocarpa POPTR_0005s27940 N 0.723
cassava30766.valid.m1 Manihot esculenta cassava30766.valid.m1 N 0.723
cassava30765.valid.m1 Manihot esculenta cassava30765.valid.m1 N 0.723
cassava23933.valid.m1 Manihot esculenta cassava23933.valid.m1 N 0.723
GRMZM2G031827 Zea mays GRMZM2G031827 N 0.723
U2AF35B Arabidopsis thaliana AT5G42820-TAIR-G N 0.723
GRMZM2G020928 Zea mays GRMZM2G020928 N 0.723
PDK_20s1490591g003 Phoenix dactylifera PDK_20s1490591g003 N 0.723
ppa025949m Prunus persica ppa025949m N 0.723
MDP0000284705 Malus x domestica MDP0000284705 N 0.723
XM_002863687.1 Arabidopsis lyrata fgenesh2_kg.8__553__AT5G42820.1 N 0.723
cassava34088.m1 Manihot esculenta cassava34088.m1 N 0.723
SB09G028530 Sorghum bicolor Sb09g028530 N 0.723
29092.m000448 Ricinus communis 29092.m000448 N 0.723
chr3.CM0396.90.nc Lotus japonicus chr3.CM0396.90.nc N 0.723
MDP0000321343 Malus x domestica MDP0000321343 N 0.723
30170.m013808 Ricinus communis 30170.m013808 N 0.723
THAPSDRAFT_270037 Thalassiosira pseudonana Thaps270037 N 0.714
Glyma19g37530.1 Glycine max Glyma19g37530.1 N 0.714
mgf001805m Mimulus guttatus mgf001805m N 0.714
fgenesh1_kg.1_#_193_#_3831_1_CBOZ_CBPA Coccomyxa C 169 fgenesh1_kg.1_#_193_#_3831_1_CBOZ_CBPA N 0.714
MDP0000640144 Malus x domestica MDP0000640144 N 0.714
SB03G030670 Sorghum bicolor Sb03g030670 N 0.714
Glyma03g34840.1 Glycine max Glyma03g34840.1 N 0.714
estExt_fgeneshCV_kg.C_10018 Chlorella vulgaris estExt_fgeneshCV_kg.C_10018 N 0.714
XM_002890695.1 Arabidopsis lyrata fgenesh2_kg.1__2923__AT1G27650.1 N 0.714
chr1.CM0378.200.nd Lotus japonicus chr1.CM0378.200.nd N 0.714
BRADI2G16520 Brachypodium distachyon BRADI2G16520 N 0.714
LOC_Os05g48960 Oryza sativa LOC_Os05g48960 N 0.714
BGIOSIBCE020024 Oryza indica BGIOSIBCE020024 N 0.714
ATU2AF35A Arabidopsis thaliana AT1G27650-TAIR-G N 0.714
EDO07135.1 Babesia bovis EDO07135.1 N 0.705
BRADI4G33870 Brachypodium distachyon BRADI4G33870 N 0.705
Sb02g028540 Sorghum bicolor Sb02g028540 N 0.705
PKH_091670 Plasmodium knowlesi PKH_091670 N 0.705
PVX_091600 Plasmodium vivax PVX_091600 N 0.705
Cucsa.272480 Cucumis sativus Cucsa.272480 N 0.705