CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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30169.m006471
(
Ricinus communis
)
CCCH ZF,RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
PF00076 (RRM_1)
IPR000571
IPR000504
30169.m006471
T00820_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
30169.m006471
CCCH ZF
239
260
KPCLYFARGFCKNGTSCRFLHG
30169.m006471
RRM
377
437
DSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKLILAKGNPHFVCDSRVL
Links
Other
CCCH ZF,RRM
family RBPs
Other
Ricinus communis
RBPs
79 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
eIF3-S9
Drosophila melanogaster
FBgn0034237
N
0.000
GE11867
Drosophila yakuba
FBgn0229653
N
0.000
GK21404
Drosophila willistoni
FBgn0223396
N
0.000
GJ20575
Drosophila virilis
FBgn0207714
N
0.000
GD11284
Drosophila simulans
FBgn0183033
N
0.000
GM21793
Drosophila sechellia
FBgn0176671
N
0.000
GL11461
Drosophila persimilis
FBgn0149070
N
0.000
GI20840
Drosophila mojavensis
FBgn0143574
N
0.000
GG21791
Drosophila erecta
FBgn0113969
N
0.000
GF11342
Drosophila ananassae
FBgn0088382
N
0.000
GA24735-RA
Drosophila pseudoobscura
FBgn0246121
N
0.000