CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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How to cite
GJ20575
(
Drosophila virilis
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
FBgn0207714
T44090_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
FBpp0234992
RRM
75
133
LKSVINKLFSQCGEIVNVVYPVDEEGKTKGYAFMEYKTASQAEDAVKKLNNHRLDKNYT
Links
Other
RRM
family RBPs
Other
Drosophila virilis
RBPs
11 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
GI20840
Drosophila mojavensis
FBgn0143574
N
0.983
GH20755
Drosophila grimshawi
FBgn0128218
N
0.934
GF11342
Drosophila ananassae
FBgn0088382
N
0.902
GM21793
Drosophila sechellia
FBgn0176671
N
0.869
GL11461
Drosophila persimilis
FBgn0149070
N
0.869
GA24735-RA
Drosophila pseudoobscura
FBgn0246121
N
0.869
GD11284
Drosophila simulans
FBgn0183033
N
0.869
GK21404
Drosophila willistoni
FBgn0223396
N
0.864
eIF3-S9
Drosophila melanogaster
FBgn0034237
N
0.864
GE11867
Drosophila yakuba
FBgn0229653
N
0.852
GG21791
Drosophila erecta
FBgn0113969
N
0.847