CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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UREG_04706
(
Uncinocarpus reesii
)
CCCH ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
IPR000571
UREG_04706
T01694_0.6
Broad (2011-Oct-27)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
URET_04706
CCCH ZF
92
117
PKTVLCVFFKKGSCEKGKKCKFSHDP
Links
Other
CCCH ZF
family RBPs
Other
Uncinocarpus reesii
RBPs
72 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
PMAA_036360
Penicillium marneffei
PMAA_036360
N
0.769
estExt_fgenesh1_pm.C_130118
Neurospora tetrasperma
estExt_fgenesh1_pm.C_130118
N
0.846
estExt_fgenesh1_pg.C_70448
Myceliophthora thermophila
estExt_fgenesh1_pg.C_70448
N
0.769
estExt_fgenesh1_pg.C_40101
Trichoderma atroviride
estExt_fgenesh1_pg.C_40101
N
0.769
e_gw1.2.668.1
Sporobolomyces roseus
e_gw1.2.668.1
N
0.769
e_gw1.19.91.1
Melampsora laricis populina
e_gw1.19.91.1
N
0.769
Aqu1.222312
Amphimedon queenslandica
Aqu1.222312
N
0.731
72073
Helobdella robusta
72073
N
0.731
NCU01795
Neurospora crassa
NCU01795
N
0.846
F27D4.4
Caenorhabditis elegans
F27D4.4
N
0.731
ZC3H15
Takifugu rubripes
ENSTRUG00000004988
N
0.731
ZC3H15
Oryzias latipes
ENSORLG00000018606
N
0.731
ZC3H15
Gasterosteus aculeatus
ENSGACG00000011648
N
0.731
ENSETEG00000015556
Echinops telfairi
ENSETEG00000015556
N
0.731
zc3h15
Danio rerio
ENSDARG00000015889
N
0.731
CRE20408
Caenorhabditis remanei
CRE20408
N
0.731
CJA17052
Caenorhabditis japonica
CJA17052
N
0.731
estExt_fgenesh1_pm.C_chr_90145
Mycosphaerella graminicola
estExt_fgenesh1_pm.C_chr_90145
N
0.731
estExt_fgenesh2_kg.C_60126
Thielavia terrestris
estExt_fgenesh2_kg.C_60126
N
0.769
Pc21g03130
Penicillium chrysogenum
Pc21g03130
N
0.846
Pa_3_8730
Podospora anserina
Pa_3_8730
N
0.885
Minc08580
Meloidogyne incognita
Minc08580
N
0.769
KLTH0G08162g
Kluyveromyces thermotolerans
KLTH0G08162g
N
0.731
fgenesh1_pg.00710_#_148
Aspergillus carbonarius
fgenesh1_pg.00710_#_148
N
0.808
estExt_Genewise1.C_22051
Cryphonectria parasitica
estExt_Genewise1.C_22051
N
0.846
e_gw1.8.939.1
Pleurotus ostreatus
e_gw1.8.939.1
N
0.846
AB07703.1
Alternaria brassicicola
AB07703.1
N
0.885
gwh2.4.391.1
Phanerochaete chrysosporium
gwh2.4.391.1
N
0.769
gw1.23.236.1
Trichoderma virens
gw1.23.236.1
N
0.769
estExt_Genewise1Plus.C_sca_12_chr5_2_00446
Nectria haematococca
estExt_Genewise1Plus.C_sca_12_chr5_2_00446
N
0.731
estExt_Genewise1Plus.C_31385
Mycosphaerella fijiensis
estExt_Genewise1Plus.C_31385
N
0.885
estExt_Genewise1.C_60471
Cochliobolus heterostrophus C5
estExt_Genewise1.C_60471
N
0.885
estExt_Genewise1.C_30385
Mucor circinelloides
estExt_Genewise1.C_30385
N
0.731
estExt_Genewise1.C_210247
Trichoderma reesei
estExt_Genewise1.C_210247
N
0.769
estExt_Genewise1.C_110154
Neurospora discreta
estExt_Genewise1.C_110154
N
0.846
CBN11546
Caenorhabditis brenneri
CBN11546
N
0.731
CBN03898
Caenorhabditis brenneri
CBN03898
N
0.731
PABG_07629
Paracoccidioides brasiliensis
PABG_07629
N
0.962
MGYG_00125
Microsporum gypseum
MGYG_00125
N
0.885
MGG_07010
Magnaporthe oryzae
MGG_07010
N
0.885
MCYG_02954
Microsporum canis
MCYG_02954
N
0.885
HCAG_08348
Histoplasma capsulatum
HCAG_08348
N
0.962
DEHA0A09449g
Debaryomyces hansenii
DEHA0A09449g
N
0.731
CTRG_02162
Candida tropicalis
CTRG_02162
N
0.731
CPSG_09723
Coccidioides posadasii
CPSG_09723
N
0.923
CPAG_03559
Candida parapsilosis
CPAG_03559
N
0.769
CNBG_3113
Cryptococcus neoformans
CNBG_3113
N
0.808
CLUG_02796
Candida lusitaniae
CLUG_02796
N
0.731
CIMG_09790
Coccidioides immitis
CIMG_09790
N
0.923
CHGG_07887
Chaetomium globosum
CHGG_07887
N
0.731
CC1G_07829
Coprinopsis cinerea
CC1G_07829
N
0.808
BDBG_01641
Blastomyces dermatitidis
BDBG_01641
N
0.962
BC1G_06447
Botrytis cinerea
BC1G_06447
N
0.808
PGTG_08922
Puccinia graminis
PGTG_08922
N
0.769
PGUG_02031
Candida guilliermondii
PGUG_02031
N
0.731
CBG00292
Caenorhabditis briggsae
CBG00292
N
0.731
NFIA_073040
Neosartorya fischeri
CADNFIAG00007899
N
0.846
ATEG_06133
Aspergillus terreus
CADATEAG00002525
N
0.846
ANIA_06922
Aspergillus nidulans
CADANIAG00007728
N
0.769
An14g05330
Aspergillus niger
CADANGAG00011470
N
0.808
AFUA_5G13930
Aspergillus fumigatus
CADAFUAG00006431
N
0.846
ACLA_016930
Aspergillus clavatus
CADACLAG00000891
N
0.885
DGIL_AUG5s16g7t1
Acyrtosiphon pisum
DGIL_AUG5s16g7t1
N
0.731
VDBG_05241
Verticillium albo atrum
VDBG_05241
N
0.808
VDAG_08863
Verticillium dahliae
VDAG_08863
N
0.808
TRV_03417
Trichophyton verrucosum
TRV_03417
N
0.885
TESG_03135
Trichophyton tonsurans
TESG_03135
N
0.885
TERG_01412
Trichophyton rubrum
TERG_01412
N
0.885
TEQG_08385
Trichophyton equinum
TEQG_08385
N
0.885
SS1G_13466
Sclerotinia sclerotiorum
SS1G_13466
N
0.808
PTTG_08784
Puccinia triticina
PTTG_08784
N
0.731
ARB_01723
Arthroderma benhamiae
ARB_01723
N
0.885