PASA_GEN_19100012 (Daphnia pulex)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 PASA_GEN_19100012 T05659_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
PASA_GEN_19100012 CCCH ZF 178 204

Links

Other CCCH ZF family RBPs
Other Daphnia pulex RBPs

254 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
GLRG_04651 Colletotrichum graminicola GLRG_04651 N 0.741
estExt_fgenesh1_pm.C_110126 Cryphonectria parasitica estExt_fgenesh1_pm.C_110126 N 0.815
e_gw1.00866.533.1 Aspergillus carbonarius e_gw1.00866.533.1 N 0.852
EAT76222.1 Phaeosphaeria nodorum EAT76222.1 N 0.778
gw1.27.284.1 Neurospora tetrasperma gw1.27.284.1 N 0.778
fgenesh1_pg.C_scaffold_102000045 Daphnia pulex fgenesh1_pg.C_scaffold_102000045 N 0.000
estExt_Genewise1.C_10555 Cochliobolus heterostrophus C5 estExt_Genewise1.C_10555 N 0.815
estExt_fgenesh2_pg.C_20402 Neurospora discreta estExt_fgenesh2_pg.C_20402 N 0.778
NCU01954 Neurospora crassa NCU01954 N 0.778
An02g05190 Aspergillus niger CADANGAG00002035 N 0.852
VDAG_02435 Verticillium dahliae VDAG_02435 N 0.815
SNOG_16397 Stagonospora nodorum SNOG_16397 N 0.778
PTTG_01394 Puccinia triticina PTTG_01394 N 0.704
PTRG_10816 Pyrenophora tritici repentis PTRG_10816 N 0.815
PGTG_01325 Puccinia graminis PGTG_01325 N 0.704
PABG_00271 Paracoccidioides brasiliensis PABG_00271 N 0.815
MGG_02960 Magnaporthe oryzae MGG_02960 N 0.741
GSTUMT00004845001 Tuber melanosporum GSTUMT00004845001 N 0.815