CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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Pc22g02970
(
Penicillium chrysogenum
)
CCCH ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
IPR000571
Pc22g02970
T06459_0.6
Superfamily (2011-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
Pc22g02970.t1
CCCH ZF
280
304
SPVVCKYWLSTGQCLRADCRFSHDL
Pc22g02970.t1
CCCH ZF
306
329
THVCKYWVMGNCLAGDGCPFSHDP
Links
Other
CCCH ZF
family RBPs
Other
Penicillium chrysogenum
RBPs
39 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
EFA75926.1
Polysphondylium pallidum
EFA75926.1
N
0.000
ppa016726m
Prunus persica
ppa016726m
N
0.000
ppa019720m
Prunus persica
ppa019720m
N
0.000
ppa021588m
Prunus persica
ppa021588m
N
0.000
ppa022673m
Prunus persica
ppa022673m
N
0.000
ppa024392m
Prunus persica
ppa024392m
N
0.000
ppa026182m
Prunus persica
ppa026182m
N
0.000
ppa026240m
Prunus persica
ppa026240m
N
0.000