LIN28B (Tarsius syrichta)
CCHC ZF,CSD

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00098 (zf-CCHC)
PF00313 (CSD) 		IPR001878
IPR002059 		ENSTSYG00000006480 T06842_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
LIN28A
M153_0.6 		Homo sapiens YGGAGGR RNAcompete
Ray et al.(2013)
RNCMPT00162 		0.827
LIN28A
M035_0.6 		Homo sapiens HGGAGWA RNAcompete
Ray et al.(2013)
RNCMPT00036 		0.827
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSTSYP00000005933 CSD 55 128
ENSTSYP00000005933 CCHC ZF 153 169
ENSTSYP00000005933 CCHC ZF 175 192

Links

Other CCHC ZF,CSD family RBPs
Other Tarsius syrichta RBPs

74 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
SLIRP_BOVIN Bos taurus ENSBTAG00000008135 N 0.000
C14orf156 Oryctolagus cuniculus ENSOCUG00000009713 N 0.000
C14orf156 Otolemur garnettii ENSOGAG00000006933 N 0.000
C14orf156 Ochotona princeps ENSOPRG00000007560 N 0.000
ENSPPYG00000006030 Pongo pygmaeus ENSPPYG00000006030 N 0.000
C14orf156 Pan troglodytes ENSPTRG00000030691 N 0.000
LOC688717 Rattus norvegicus ENSRNOG00000012314 N 0.000
C14orf156 Tupaia belangeri ENSTBEG00000013979 N 0.000
C14orf156 Vicugna pacos ENSVPAG00000001781 N 0.000
C14orf156 Ornithorhynchus anatinus ENSOANG00000022366 N 0.000
1810035L17Rik Mus musculus ENSMUSG00000021040 N 0.000
C14orf156 Canis familiaris ENSCAFG00000017230 N 0.000
LOC100405163 Callithrix jacchus ENSCJAG00000016946 N 0.000
C14orf156 Cavia porcellus ENSCPOG00000001500 N 0.000
LOC100052429 Equus caballus ENSECAG00000000712 N 0.000
C14orf156 Echinops telfairi ENSETEG00000010345 N 0.000
C14orf156 Homo sapiens ENSG00000119705 N 0.000
C14orf156 Gorilla gorilla ENSGGOG00000011059 N 0.000
C14orf156 Microcebus murinus ENSMICG00000012080 N 0.000
Ame_R014974 Ailuropoda melanoleuca Ame_R014974 N 0.000