CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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DDX41
(
Gasterosteus aculeatus
)
CCHC ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00098 (zf-CCHC)
IPR001878
ENSGACG00000018334
T10212_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSGACP00000024240
CCHC ZF
574
591
RGCTFCGGLGHRITDCPK
Links
Other
CCHC ZF
family RBPs
Other
Gasterosteus aculeatus
RBPs
79 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
KHSRP
Homo sapiens
ENSG00000088247
D
0.000
AAN77160
Xenopus laevis
AAN77160
I
0.000
KHSRP
Pteropus vampyrus
ENSPVAG00000007251
I
0.000
KHSRP
Pan troglodytes
ENSPTRG00000010364
I
0.000
FUBP1
Pan troglodytes
ENSPTRG00000000888
I
0.000
ENSPPYG00000019172
Pongo pygmaeus
ENSPPYG00000019172
I
0.000
ENSPPYG00000009454
Pongo pygmaeus
ENSPPYG00000009454
I
0.000
ENSPPYG00000001219
Pongo pygmaeus
ENSPPYG00000001219
I
0.000
FUBP1
Procavia capensis
ENSPCAG00000012617
I
0.000
KHSRP
Procavia capensis
ENSPCAG00000000246
I
0.000
KHSRP
Oryzias latipes
ENSORLG00000011882
I
0.000
KHSRP
Ochotona princeps
ENSOPRG00000010594
I
0.000
FUBP1
Otolemur garnettii
ENSOGAG00000014233
I
0.000
FUBP1
Ornithorhynchus anatinus
ENSOANG00000009777
I
0.000
KHSRP
Ornithorhynchus anatinus
ENSOANG00000000261
I
0.000
Fubp1
Mus musculus
ENSMUSG00000028034
I
0.000
ENSSSCG00000003767
Sus scrofa
ENSSSCG00000003767
I
0.000
ENSSSCG00000003771
Sus scrofa
ENSSSCG00000003771
I
0.000
KHSRP
Sus scrofa
ENSSSCG00000013538
I
0.000
AAI69923
Xenopus laevis
AAI69923
I
0.000
AAI61696
Xenopus laevis
AAI61696
I
0.000
Ame_R016412
Ailuropoda melanoleuca
Ame_R016412
I
0.000
Ame_R010564
Ailuropoda melanoleuca
Ame_R010564
I
0.000
khsrp
Xenopus tropicalis
ENSXETG00000021862
I
0.000
fubp1
Xenopus tropicalis
ENSXETG00000013137
I
0.000
KHSRP
Vicugna pacos
ENSVPAG00000010837
I
0.000
FUBP1
Vicugna pacos
ENSVPAG00000004709
I
0.000
KHSRP
Tursiops truncatus
ENSTTRG00000010390
I
0.000
FUBP1
Tursiops truncatus
ENSTTRG00000000096
I
0.000
FUBP1
Tarsius syrichta
ENSTSYG00000000148
I
0.000
KHSRP
Takifugu rubripes
ENSTRUG00000010395
I
0.000
KHSRP
Tetraodon nigroviridis
ENSTNIG00000014067
I
0.000
FUBP1
Spermophilus tridecemlineatus
ENSSTOG00000014312
I
0.000
KHSRP
Spermophilus tridecemlineatus
ENSSTOG00000002371
I
0.000
Khsrp
Mus musculus
ENSMUSG00000007670
I
0.000
KHSRP
Monodelphis domestica
ENSMODG00000001952
I
0.000
KHSRP
Macaca mulatta
ENSMMUG00000005597
I
0.000
FUBP1
Equus caballus
ENSECAG00000010867
I
0.000
Fubp1
Dipodomys ordii
ENSDORG00000016534
I
0.000
Khsrp
Dipodomys ordii
ENSDORG00000002447
I
0.000
KHSRP
Dasypus novemcinctus
ENSDNOG00000009590
I
0.000
KHSRP
Danio rerio
ENSDARG00000026489
I
0.000
KHSRP
Cavia porcellus
ENSCPOG00000005140
I
0.000
FUBP1
Cavia porcellus
ENSCPOG00000002757
I
0.000
KHSRP
Callithrix jacchus
ENSCJAG00000016627
I
0.000
FUBP1
Callithrix jacchus
ENSCJAG00000007062
I
0.000
FUBP1
Choloepus hoffmanni
ENSCHOG00000008177
I
0.000
FUBP1
Canis familiaris
ENSCAFG00000020361
I
0.000
KHSRP
Canis familiaris
ENSCAFG00000018667
I
0.000
LOC505564
Bos taurus
ENSBTAG00000021018
I
0.000
Q08DJ3_BOVIN
Bos taurus
ENSBTAG00000008926
I
0.000
KHSRP
Anolis carolinensis
ENSACAG00000015398
I
0.000
LOC100065608
Equus caballus
ENSECAG00000018305
I
0.000
KHSRP
Echinops telfairi
ENSETEG00000004793
I
0.000
FUBP1
Macaca mulatta
ENSMMUG00000002899
I
0.000
KHSRP
Myotis lucifugus
ENSMLUG00000015543
I
0.000
FUBP1
Myotis lucifugus
ENSMLUG00000014802
I
0.000
KHSRP
Microcebus murinus
ENSMICG00000007863
I
0.000
FUBP1
Meleagris gallopavo
ENSMGAG00000009424
I
0.000
KHSRP
Macropus eugenii
ENSMEUG00000016601
I
0.000
FUBP1
Loxodonta africana
ENSLAFG00000003273
I
0.000
KHSRP
Loxodonta africana
ENSLAFG00000002426
I
0.000
FUBP1
Gorilla gorilla
ENSGGOG00000027554
I
0.000
KHSRP
Gorilla gorilla
ENSGGOG00000007028
I
0.000
Q5ZHW0_CHICK
Gallus gallus
ENSGALG00000008939
I
0.000
KHSRP
Gasterosteus aculeatus
ENSGACG00000018990
I
0.000
KHSRP
Gasterosteus aculeatus
ENSGACG00000012422
I
0.000
FUBP1
Homo sapiens
ENSG00000162613
I
0.000
KHSRP
Felis catus
ENSFCAG00000003731
I
0.000
FUBP1
Anolis carolinensis
ENSACAG00000006310
I
0.000