CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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How to cite
LOC_Os04g04820
(
Oryza sativa
)
CCHC ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00098 (zf-CCHC)
IPR001878
LOC_Os04g04820
T11120_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
LOC_Os04g04820.1
CCHC ZF
311
328
QVCFNCYKPGHFARECPK
Links
Other
CCHC ZF
family RBPs
Other
Oryza sativa
RBPs
67 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
MKRN3
Choloepus hoffmanni
ENSCHOG00000004895
N
0.000
MKRN3
Tarsius syrichta
ENSTSYG00000009002
N
0.000
MKRN3
Spermophilus tridecemlineatus
ENSSTOG00000006095
N
0.000
Mkrn3
Rattus norvegicus
ENSRNOG00000010172
N
0.000
Q6J9M5_PANTR
Pan troglodytes
ENSPTRG00000006823
N
0.000
ENSPPYG00000006266
Pongo pygmaeus
ENSPPYG00000006266
N
0.000
MKRN3
Oryctolagus cuniculus
ENSOCUG00000012822
N
0.000
Mkrn3
Mus musculus
ENSMUSG00000070527
N
0.000
MKRN3
Macaca mulatta
ENSMMUG00000007879
N
0.000
Q6J9M4_9PRIM
Gorilla gorilla
ENSGGOG00000013279
N
0.000
MKRN3
Felis catus
ENSFCAG00000009688
N
0.000
MKRN3
Cavia porcellus
ENSCPOG00000003604
N
0.000
MKRN3
Callithrix jacchus
ENSCJAG00000022162
N
0.000
Ame_R014340
Ailuropoda melanoleuca
Ame_R014340
N
0.000