CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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How to cite
LOC_Os12g43179
(
Oryza sativa
)
CCHC ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00098 (zf-CCHC)
IPR001878
LOC_Os12g43179
T12661_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
LOC_Os12g43179.1
CCHC ZF
496
513
VDCFNCGEYGHYANTCPH
Links
Other
CCHC ZF
family RBPs
Other
Oryza sativa
RBPs
53 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
BGIOSIBCE035668
Oryza indica
BGIOSIBCE035668
N
0.000
BRADI4G26487
Brachypodium distachyon
BRADI4G26487
N
0.000
LOC_Os11g04390
Oryza sativa
LOC_Os11g04390
N
0.000
LOC_Os12g04180
Oryza sativa
LOC_Os12g04180
N
0.000
SB05G002300
Sorghum bicolor
Sb05g002300
N
0.000
GRMZM2G075942
Zea mays
GRMZM2G075942
N
0.000
GRMZM2G101867
Zea mays
GRMZM2G101867
N
0.000