CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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LOC_Os12g43230
(
Oryza sativa
)
CCHC ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00098 (zf-CCHC)
IPR001878
LOC_Os12g43230
T12662_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
LOC_Os12g43230.1
CCHC ZF
285
302
VVCFNCGEPGHYADKCPK
Links
Other
CCHC ZF
family RBPs
Other
Oryza sativa
RBPs
634 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
ppa006486m
Prunus persica
ppa006486m
N
0.000
mgf009246m
Mimulus guttatus
mgf009246m
N
0.000
mgf007385m
Mimulus guttatus
mgf007385m
N
0.000
mgf004253m
Mimulus guttatus
mgf004253m
N
0.000
gw1.88.127.1
Physcomitrella patens
gw1.88.127.1
N
0.000
Glyma06g48230.1
Glycine max
Glyma06g48230.1
N
0.000
Glyma04g43500.1
Glycine max
Glyma04g43500.1
N
0.000
estExt_gwp_gw1.C_2700027
Physcomitrella patens
estExt_gwp_gw1.C_2700027
N
0.000
estExt_Genewise1.C_1000126
Selaginella moellendorfii
estExt_Genewise1.C_1000126
N
0.000
e_gw1.98.112.1
Physcomitrella patens
e_gw1.98.112.1
N
0.000
mgf010551m
Mimulus guttatus
mgf010551m
N
0.000
GRMZM2G022763
Zea mays
GRMZM2G022763
N
0.000
GRMZM2G057450
Zea mays
GRMZM2G057450
N
0.000
MDP0000306572
Malus x domestica
MDP0000306572
N
0.000
MDP0000288579
Malus x domestica
MDP0000288579
N
0.000
MDP0000194332
Malus x domestica
MDP0000194332
N
0.000
chr6.LjT04E21.260.nc
Lotus japonicus
chr6.LjT04E21.260.nc
N
0.000
chr3.CM0129.150.nc
Lotus japonicus
chr3.CM0129.150.nc
N
0.000
Medtr4g032620
Medicago truncatula
Medtr4g032620
N
0.000
Medtr4g032540
Medicago truncatula
Medtr4g032540
N
0.000
Medtr3g013160
Medicago truncatula
Medtr3g013160
N
0.000
GRMZM2G093256
Zea mays
GRMZM2G093256
N
0.000
e_gw1.79.119.1
Physcomitrella patens
e_gw1.79.119.1
N
0.000
e_gw1.58.41.1
Physcomitrella patens
e_gw1.58.41.1
N
0.000
Cucsa.365600
Cucumis sativus
Cucsa.365600
N
0.000
GSVIVG00018993001
Vitis vinifera
GSVIVG00018993001
N
0.000
XM_002866951.1
Arabidopsis lyrata
fgenesh2_kg.7__398__AT4G36690.1
N
0.000
XM_002888074.1
Arabidopsis lyrata
fgenesh2_kg.2__371__AT1G60900.1
N
0.000
BRADI4G38060
Brachypodium distachyon
BRADI4G38060
N
0.000
BRADI4G12260
Brachypodium distachyon
BRADI4G12260
N
0.000
BRADI4G09940
Brachypodium distachyon
BRADI4G09940
N
0.000
BGIOSIBCE035101
Oryza indica
BGIOSIBCE035101
N
0.000
BGIOSIBCE008762
Oryza indica
BGIOSIBCE008762
N
0.000
ATU2AF65A
Arabidopsis thaliana
AT4G36690-TAIR-G
N
0.000
LOC_Os11g41820
Oryza sativa
LOC_Os11g41820
N
0.000
LOC_Os11g45590
Oryza sativa
LOC_Os11g45590
N
0.000
B9H2X2_POPTR
Populus trichocarpa
POPTR_0004s04100
N
0.000
cassava40785.m1
Manihot esculenta
cassava40785.m1
N
0.000
cassava40784.m1
Manihot esculenta
cassava40784.m1
N
0.000
cassava40783.m1
Manihot esculenta
cassava40783.m1
N
0.000
cassava37462.valid.m1
Manihot esculenta
cassava37462.valid.m1
N
0.000
cassava37461.valid.m1
Manihot esculenta
cassava37461.valid.m1
N
0.000
cassava35938.valid.m1
Manihot esculenta
cassava35938.valid.m1
N
0.000
cassava35937.valid.m1
Manihot esculenta
cassava35937.valid.m1
N
0.000
B9HEU4_POPTR
Populus trichocarpa
POPTR_0007s12550
N
0.000
B9MXR1_POPTR
Populus trichocarpa
POPTR_0005s12700
N
0.000
AT1G60900
Arabidopsis thaliana
AT1G60900-TAIR-G
N
0.000