LOC_Os12g43230 (Oryza sativa)
CCHC ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00098 (zf-CCHC) IPR001878 LOC_Os12g43230 T12662_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
LOC_Os12g43230.1 CCHC ZF 285 302

Links

Other CCHC ZF family RBPs
Other Oryza sativa RBPs

634 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ppa006486m Prunus persica ppa006486m N 0.000
mgf009246m Mimulus guttatus mgf009246m N 0.000
mgf007385m Mimulus guttatus mgf007385m N 0.000
mgf004253m Mimulus guttatus mgf004253m N 0.000
gw1.88.127.1 Physcomitrella patens gw1.88.127.1 N 0.000
Glyma06g48230.1 Glycine max Glyma06g48230.1 N 0.000
Glyma04g43500.1 Glycine max Glyma04g43500.1 N 0.000
estExt_gwp_gw1.C_2700027 Physcomitrella patens estExt_gwp_gw1.C_2700027 N 0.000
estExt_Genewise1.C_1000126 Selaginella moellendorfii estExt_Genewise1.C_1000126 N 0.000
e_gw1.98.112.1 Physcomitrella patens e_gw1.98.112.1 N 0.000
mgf010551m Mimulus guttatus mgf010551m N 0.000
GRMZM2G022763 Zea mays GRMZM2G022763 N 0.000
GRMZM2G057450 Zea mays GRMZM2G057450 N 0.000
MDP0000306572 Malus x domestica MDP0000306572 N 0.000
MDP0000288579 Malus x domestica MDP0000288579 N 0.000
MDP0000194332 Malus x domestica MDP0000194332 N 0.000
chr6.LjT04E21.260.nc Lotus japonicus chr6.LjT04E21.260.nc N 0.000
chr3.CM0129.150.nc Lotus japonicus chr3.CM0129.150.nc N 0.000
Medtr4g032620 Medicago truncatula Medtr4g032620 N 0.000
Medtr4g032540 Medicago truncatula Medtr4g032540 N 0.000
Medtr3g013160 Medicago truncatula Medtr3g013160 N 0.000
GRMZM2G093256 Zea mays GRMZM2G093256 N 0.000
e_gw1.79.119.1 Physcomitrella patens e_gw1.79.119.1 N 0.000
e_gw1.58.41.1 Physcomitrella patens e_gw1.58.41.1 N 0.000
Cucsa.365600 Cucumis sativus Cucsa.365600 N 0.000
GSVIVG00018993001 Vitis vinifera GSVIVG00018993001 N 0.000
XM_002866951.1 Arabidopsis lyrata fgenesh2_kg.7__398__AT4G36690.1 N 0.000
XM_002888074.1 Arabidopsis lyrata fgenesh2_kg.2__371__AT1G60900.1 N 0.000
BRADI4G38060 Brachypodium distachyon BRADI4G38060 N 0.000
BRADI4G12260 Brachypodium distachyon BRADI4G12260 N 0.000
BRADI4G09940 Brachypodium distachyon BRADI4G09940 N 0.000
BGIOSIBCE035101 Oryza indica BGIOSIBCE035101 N 0.000
BGIOSIBCE008762 Oryza indica BGIOSIBCE008762 N 0.000
ATU2AF65A Arabidopsis thaliana AT4G36690-TAIR-G N 0.000
LOC_Os11g41820 Oryza sativa LOC_Os11g41820 N 0.000
LOC_Os11g45590 Oryza sativa LOC_Os11g45590 N 0.000
B9H2X2_POPTR Populus trichocarpa POPTR_0004s04100 N 0.000
cassava40785.m1 Manihot esculenta cassava40785.m1 N 0.000
cassava40784.m1 Manihot esculenta cassava40784.m1 N 0.000
cassava40783.m1 Manihot esculenta cassava40783.m1 N 0.000
cassava37462.valid.m1 Manihot esculenta cassava37462.valid.m1 N 0.000
cassava37461.valid.m1 Manihot esculenta cassava37461.valid.m1 N 0.000
cassava35938.valid.m1 Manihot esculenta cassava35938.valid.m1 N 0.000
cassava35937.valid.m1 Manihot esculenta cassava35937.valid.m1 N 0.000
B9HEU4_POPTR Populus trichocarpa POPTR_0007s12550 N 0.000
B9MXR1_POPTR Populus trichocarpa POPTR_0005s12700 N 0.000
AT1G60900 Arabidopsis thaliana AT1G60900-TAIR-G N 0.000