B9HQG5_POPTR (Populus trichocarpa)
CCHC ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00098 (zf-CCHC) IPR001878 POPTR_0009s15750 T12727_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0009s15750.1 CCHC ZF 193 210
POPTR_0009s15750.1 CCHC ZF 216 233
POPTR_0009s15750.1 CCHC ZF 245 262
POPTR_0009s15750.1 CCHC ZF 272 282
POPTR_0009s15750.1 CCHC ZF 299 310
POPTR_0009s15750.1 CCHC ZF 323 338
POPTR_0009s15750.1 CCHC ZF 352 369

Links

Other CCHC ZF family RBPs
Other Populus trichocarpa RBPs

3 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
B9MYP8_POPTR Populus trichocarpa POPTR_0004s20450 N 0.831
Cucsa.111740 Cucumis sativus Cucsa.111740 N 0.712
MDP0000322170 Malus x domestica MDP0000322170 N 0.730