cassava23081.valid.m1 (Manihot esculenta)
CCHC ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00098 (zf-CCHC) IPR001878 cassava23081.valid.m1 T13380_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
cassava23081.valid.m1 CCHC ZF 550 567

Links

Other CCHC ZF family RBPs
Other Manihot esculenta RBPs

80 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
PTRG_00525 Pyrenophora tritici repentis PTRG_00525 N 0.000
GE22859 Drosophila yakuba FBgn0240063 N 0.000
estExt_fgenesh1_pg.C_120215 Batrachochytrium dendrobatidis estExt_fgenesh1_pg.C_120215 N 0.000
estExt_Genewise1.C_350015 Capitella teleta estExt_Genewise1.C_350015 N 0.000
mgf000781m Mimulus guttatus mgf000781m N 0.000
EAT85557.1 Phaeosphaeria nodorum EAT85557.1 N 0.000
Sjc_0049010 Schistosoma japonicum Sjc_0049010 N 0.000
Cd36_81440 Candida dubliniensis Cd36_81440 N 0.000
GSTUMT00005826001 Tuber melanosporum GSTUMT00005826001 N 0.000
Smp_099900 Schistosoma mansoni Smp_099900 N 0.000
XP_001191490.1 Strongylocentrotus purpuratus XP_001191490.1 N 0.000
GJ20510 Drosophila virilis FBgn0207650 N 0.000
GM20672 Drosophila sechellia FBgn0175554 N 0.000
RO3G_08915 Rhizopus oryzae RO3G_08915 N 0.000
SNOG_06906 Stagonospora nodorum SNOG_06906 N 0.000
AAEL010535 Aedes aegypti AAEL010535 N 0.000
CG8635 Drosophila melanogaster FBgn0033317 N 0.000
GA21225-RA Drosophila pseudoobscura FBgn0081213 N 0.000
GF12572 Drosophila ananassae FBgn0089609 N 0.000
GG10627 Drosophila erecta FBgn0102935 N 0.000
GH21804 Drosophila grimshawi FBgn0129265 N 0.000
GI20775 Drosophila mojavensis FBgn0143510 N 0.000
GL11672 Drosophila persimilis FBgn0149281 N 0.000
XP_785608.2 Strongylocentrotus purpuratus XP_785608.2 N 0.000