CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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fgenesh2_kg.3_#_1217_#_0_0_FUV197G01D0W21_CFPN
(
Serpula lacrymans
)
CCHC ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00098 (zf-CCHC)
IPR001878
fgenesh2_kg.3_#_1217_#_0_0_FUV197G01D0W21_CFPN
T15479_0.6
Superfamily (2011-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
fgenesh2_kg.3_#_1217_#_0_0_FUV197G01D0W21_CFPN
CCHC ZF
86
103
GRCYRCGEKGHRSFECKD
Links
Other
CCHC ZF
family RBPs
Other
Serpula lacrymans
RBPs
29 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
LOC_Os01g15690
Oryza sativa
LOC_Os01g15690
N
0.000
LOC_Os10g04074
Oryza sativa
LOC_Os10g04074
N
0.000
LOC_Os09g08340
Oryza sativa
LOC_Os09g08340
N
0.000
LOC_Os08g38640
Oryza sativa
LOC_Os08g38640
N
0.000
LOC_Os07g05430
Oryza sativa
LOC_Os07g05430
N
0.000
LOC_Os06g43540
Oryza sativa
LOC_Os06g43540
N
0.000
LOC_Os05g36940
Oryza sativa
LOC_Os05g36940
N
0.000
LOC_Os04g54450
Oryza sativa
LOC_Os04g54450
N
0.000
LOC_Os04g29380
Oryza sativa
LOC_Os04g29380
N
0.000
LOC_Os03g56530
Oryza sativa
LOC_Os03g56530
N
0.000
LOC_Os03g05850
Oryza sativa
LOC_Os03g05850
N
0.000
LOC_Os02g34030
Oryza sativa
LOC_Os02g34030
N
0.000
LOC_Os01g52000
Oryza sativa
LOC_Os01g52000
N
0.000
LOC_Os01g32630
Oryza sativa
LOC_Os01g32630
N
0.000
LOC_Os12g01090
Oryza sativa
LOC_Os12g01090
N
0.000