LjSGA_054608.1.1 (Lotus japonicus)
CCHC ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00098 (zf-CCHC) IPR001878 LjSGA_054608.1.1 T15926_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
LjSGA_054608.1.1 CCHC ZF 413 430

Links

Other CCHC ZF family RBPs
Other Lotus japonicus RBPs

12 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
cassava3117.m1 Manihot esculenta cassava3117.m1 N 0.722
mgf026139m Mimulus guttatus mgf026139m N 0.722
mgf021643m Mimulus guttatus mgf021643m N 0.722
mgf020201m Mimulus guttatus mgf020201m N 0.722
mgf020111m Mimulus guttatus mgf020111m N 0.722
mgf019326m Mimulus guttatus mgf019326m N 0.722
cassava9322.m1 Manihot esculenta cassava9322.m1 N 0.722
cassava4845.m1 Manihot esculenta cassava4845.m1 N 0.722
cassava44276.m1 Manihot esculenta cassava44276.m1 N 0.722
cassava34578.m1 Manihot esculenta cassava34578.m1 N 0.778
cassava33153.m1 Manihot esculenta cassava33153.m1 N 0.722
chr1.CM1875.130.nc Lotus japonicus chr1.CM1875.130.nc N 1.000