nasonia_NCBI_hmm1188384 (Nasonia vitripennis)
CSD

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00313 (CSD) IPR002059 nasonia_NCBI_hmm1188384 T16697_0.6 DroSpeGe (2008-Jul-18)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
YB-1
M111_0.6 		Homo sapiens AACAUCD RNAcompete
Ray et al.(2013)
RNCMPT00116 		0.704
YB-1
M081_0.6 		Homo sapiens AACAUC RNAcompete
Ray et al.(2013)
RNCMPT00083 		0.704
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
nasonia_NCBI_hmm1188384 CSD 68 138

Links

Other CSD family RBPs
Other Nasonia vitripennis RBPs

27 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
amel4_ncbi_hmm3751 Apis mellifera amel4_ncbi_hmm3751 I 0.803
GE20150 Drosophila yakuba FBgn0237472 I 0.817
GA23502-RA Drosophila pseudoobscura FBgn0244903 I 0.817
ISCW005281 Ixodes scapularis ISCW005281 I 0.704
PHUM156710 Pediculus humanus PHUM156710 I 0.789
PHUM156720 Pediculus humanus PHUM156720 I 0.775
e_gw.71.100.1 Nematostella vectensis e_gw.71.100.1 I 0.718
estExt_Genewise1Plus.C_1630040 Capitella teleta estExt_Genewise1Plus.C_1630040 I 0.746
gw1.79.157.1 Lottia gigantea gw1.79.157.1 I 0.732
NCBI_GNO_0300554 Daphnia pulex NCBI_GNO_0300554 I 0.789
BGIBMGA000526 Bombyx mori BGIBMGA000526 I 0.732
XP_001178393.1 Strongylocentrotus purpuratus XP_001178393.1 I 0.718
GK16710 Drosophila willistoni FBgn0218712 I 0.817
GJ14010 Drosophila virilis FBgn0201228 I 0.803
GD12750 Drosophila simulans FBgn0184477 I 0.817
amel4_ncbi_hmm3751 Tribolium castaneum amel4_ncbi_hmm3751 I 0.803
amel4_ncbi_hmm4087 Apis mellifera amel4_ncbi_hmm4087 I 0.803
DGIL_AUG5s15730g8t2 Acyrtosiphon pisum DGIL_AUG5s15730g8t2 I 0.761
AAEL001375 Aedes aegypti AAEL001375 I 0.803
AGAP006108 Anopheles gambiae AGAP006108 I 0.789
yps Drosophila melanogaster FBgn0022959 I 0.817
GF10852 Drosophila ananassae FBgn0087892 I 0.817
GH16919 Drosophila grimshawi FBgn0124390 I 0.803
GI13673 Drosophila mojavensis FBgn0136428 I 0.803
GL15684 Drosophila persimilis FBgn0153288 I 0.817
GM24682 Drosophila sechellia FBgn0179545 I 0.817
XP_785816.1 Strongylocentrotus purpuratus XP_785816.1 I 0.718