e_gw.71.100.1 (Nematostella vectensis)
CSD

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00313 (CSD) IPR002059 e_gw.71.100.1 T17259_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
YB-1
M111_0.6 		Homo sapiens AACAUCD RNAcompete
Ray et al.(2013)
RNCMPT00116 		0.817
YB-1
M081_0.6 		Homo sapiens AACAUC RNAcompete
Ray et al.(2013)
RNCMPT00083 		0.817
ybx2-a
M260_0.6 		Xenopus laevis GCCANACCAYCGC SELEX
Cook et al.(2011)
130_11376140 		0.764
ybx2-a
M254_0.6 		Xenopus laevis KAACAUCU SELEX
Cook et al.(2011)
115_7499328 		0.764
ybx2-a
M250_0.6 		Xenopus laevis UAACAUC SELEX
Cook et al.(2011)
114_7499328 		0.764
YBX2
M082_0.6 		Homo sapiens AACAWCD RNAcompete
Ray et al.(2013)
RNCMPT00084 		0.750
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
e_gw.71.100.1 CSD 7 77

Links

Other CSD family RBPs
Other Nematostella vectensis RBPs

177 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
PHUM156710 Pediculus humanus PHUM156710 I 0.845
estExt_Genewise1Plus.C_1630040 Capitella teleta estExt_Genewise1Plus.C_1630040 I 0.845
gw1.79.157.1 Lottia gigantea gw1.79.157.1 I 0.831
XP_001178393.1 Strongylocentrotus purpuratus XP_001178393.1 I 0.817
GL15684 Drosophila persimilis FBgn0153288 I 0.817
GF10852 Drosophila ananassae FBgn0087892 I 0.817
GA23502-RA Drosophila pseudoobscura FBgn0244903 I 0.817
GK16710 Drosophila willistoni FBgn0218712 I 0.817
XP_785816.1 Strongylocentrotus purpuratus XP_785816.1 I 0.817
PHUM156720 Pediculus humanus PHUM156720 I 0.817
e_gw.440.24.1 Branchiostoma floridae e_gw.440.24.1 I 0.806
csda Xenopus tropicalis ENSXETG00000016239 I 0.806
ENSMODG00000022963 Monodelphis domestica ENSMODG00000022963 I 0.806
ENSCSAVG00000003053 Ciona savignyi ENSCSAVG00000003053 I 0.806
amel4_ncbi_hmm3751 Tribolium castaneum amel4_ncbi_hmm3751 I 0.803
GI13673 Drosophila mojavensis FBgn0136428 I 0.803
GM24682 Drosophila sechellia FBgn0179545 I 0.803
amel4_ncbi_hmm3751 Apis mellifera amel4_ncbi_hmm3751 I 0.803
GH16919 Drosophila grimshawi FBgn0124390 I 0.803
estExt_fgeneshTA2_pg.C_60554 Trichoplax adhaerens estExt_fgeneshTA2_pg.C_60554 I 0.803
GE20150 Drosophila yakuba FBgn0237472 I 0.803
GD12750 Drosophila simulans FBgn0184477 I 0.803
amel4_ncbi_hmm4087 Apis mellifera amel4_ncbi_hmm4087 I 0.803
Ppa-cey-1 Pristionchus pacificus PPA28011 I 0.803
GJ14010 Drosophila virilis FBgn0201228 I 0.803
yps Drosophila melanogaster FBgn0022959 I 0.803
DGIL_AUG5s15730g8t2 Acyrtosiphon pisum DGIL_AUG5s15730g8t2 I 0.803
ENSEEUG00000005657 Erinaceus europaeus ENSEEUG00000005657 I 0.792
LOC100067336 Equus caballus ENSECAG00000023592 I 0.792
CSDA Echinops telfairi ENSETEG00000002557 I 0.792
CSDA Erinaceus europaeus ENSEEUG00000010415 I 0.792
ENSPPYG00000004279 Pongo pygmaeus ENSPPYG00000004279 I 0.792
ybx1 Danio rerio ENSDARG00000004757 I 0.792
CSDA Pan troglodytes ENSPTRG00000004681 I 0.792
YBX1 Pteropus vampyrus ENSPVAG00000005504 I 0.792
CSDA Pteropus vampyrus ENSPVAG00000006740 I 0.792
Csda Rattus norvegicus ENSRNOG00000005480 I 0.792
ENSCPOG00000010888 Cavia porcellus ENSCPOG00000010888 I 0.792
CSDA Cavia porcellus ENSCPOG00000011329 I 0.792
XR_021659.1 Pan troglodytes ENSPTRG00000000615 I 0.792
ENSECAG00000008961 Equus caballus ENSECAG00000008961 I 0.792
Csda Dipodomys ordii ENSDORG00000009103 I 0.792
CSDA Homo sapiens ENSG00000060138 I 0.792
LOC100065107 Equus caballus ENSECAG00000013777 I 0.792
YBX1 Ornithorhynchus anatinus ENSOANG00000011725 I 0.792
Csda Mus musculus ENSMUSG00000030189 I 0.792
YBX1 Microcebus murinus ENSMICG00000014984 I 0.792
YBX1 Meleagris gallopavo ENSMGAG00000006879 I 0.792
Ybx1 Mus musculus ENSMUSG00000028639 I 0.792
CSDA Myotis lucifugus ENSMLUG00000007476 I 0.792
CSDA Monodelphis domestica ENSMODG00000018248 I 0.792
CSDA Macaca mulatta ENSMMUG00000022469 I 0.792
ENSMMUG00000013136 Macaca mulatta ENSMMUG00000013136 I 0.792
CSDA Loxodonta africana ENSLAFG00000017247 I 0.792
ENSOANG00000001663 Ornithorhynchus anatinus ENSOANG00000001663 I 0.792
ENSGALG00000018512 Gallus gallus ENSGALG00000018512 I 0.792
YBOX1_CHICK Gallus gallus ENSGALG00000004848 I 0.792
YBX1 Gasterosteus aculeatus ENSGACG00000006447 I 0.792
CSDA Gorilla gorilla ENSGGOG00000001352 I 0.792
Q8AXS2_ORYLA Oryzias latipes ENSORLG00000004225 I 0.792
YBX1 Loxodonta africana ENSLAFG00000007597 I 0.792
LOC100396927 Callithrix jacchus ENSCJAG00000021660 I 0.792
YB-1 Homo sapiens ENSG00000065978 D 0.792
Q9N1Q2_CANFA Canis familiaris ENSCAFG00000013401 I 0.792
A5D7Q4_BOVIN Bos taurus ENSBTAG00000009663 I 0.792
Q90WH2_FUGRU Takifugu rubripes ENSTRUG00000015333 I 0.792
YBOX1_BOVIN Bos taurus ENSBTAG00000017368 I 0.792
YBX1 Tetraodon nigroviridis ENSTNIG00000011989 I 0.792
ENSCAFG00000002541 Canis familiaris ENSCAFG00000002541 I 0.792
AAH42217 Xenopus laevis AAH42217 I 0.792
AAI06324 Xenopus laevis AAI06324 I 0.792
ybx1 Xenopus tropicalis ENSXETG00000013436 I 0.792
Q00436 Xenopus laevis Q00436 I 0.792
CAA42778 Xenopus laevis CAA42778 I 0.792
AAI30161 Xenopus laevis AAI30161 I 0.792
YBX1 Vicugna pacos ENSVPAG00000000068 I 0.792
P21573 Xenopus laevis P21573 I 0.792
YBX1 Taeniopygia guttata ENSTGUG00000017262 I 0.792
AAH41191 Xenopus laevis AAH41191 I 0.792
LOC100401646 Callithrix jacchus ENSCJAG00000003155 I 0.792
CSDA Sus scrofa ENSSSCG00000000633 I 0.792
YBOX1_RAT Rattus norvegicus ENSRNOG00000030807 I 0.792
CSDA Choloepus hoffmanni ENSCHOG00000011988 I 0.792
Q4H2L7_CIOIN Ciona intestinalis ENSCING00000010654 I 0.792
ENSSTOG00000000116 Spermophilus tridecemlineatus ENSSTOG00000000116 I 0.792
YBX1 Monodelphis domestica ENSMODG00000017214 I 0.792
CSDA Taeniopygia guttata ENSTGUG00000012047 I 0.792
AAA49715 Xenopus laevis AAA49715 I 0.792
CSDA Tupaia belangeri ENSTBEG00000012570 I 0.792
AAEL001375 Aedes aegypti AAEL001375 I 0.789
CBN16711 Caenorhabditis brenneri CBN16711 I 0.789
NCBI_GNO_0300554 Daphnia pulex NCBI_GNO_0300554 I 0.789
CRE01789 Caenorhabditis remanei CRE01789 I 0.789
ENSMMUG00000032563 Macaca mulatta ENSMMUG00000032563 I 0.778
ENSBTAG00000006133 Bos taurus ENSBTAG00000006133 I 0.778
ENSCJAG00000010572 Callithrix jacchus ENSCJAG00000010572 I 0.778
ENSRNOG00000006596 Rattus norvegicus ENSRNOG00000006596 I 0.778
ENSECAG00000011356 Equus caballus ENSECAG00000011356 I 0.778
XP_856029.1 Canis familiaris ENSCAFG00000010117 I 0.778
ENSRNOG00000023786 Rattus norvegicus ENSRNOG00000023786 I 0.778
SNAPOd2T00011389001 Oikopleura dioica SNAPOd2T00011389001 I 0.775
CBG02981 Caenorhabditis briggsae CBG02981 I 0.775
BGIBMGA000526 Bombyx mori BGIBMGA000526 I 0.775
XP_002154000.1 Hydra magnipapillata XP_002154000.1 I 0.775
AGAP006108 Anopheles gambiae AGAP006108 I 0.775
XP_002159745.1 Hydra magnipapillata XP_002159745.1 I 0.775
Q90WH1_ORYLA Oryzias latipes ENSORLG00000006269 I 0.764
ENSGACG00000019392 Gasterosteus aculeatus ENSGACG00000019392 I 0.764
AAI55914 Xenopus laevis AAI55914 I 0.764
AAA49924 Xenopus laevis AAA49924 I 0.764
AAI55915 Xenopus laevis AAI55915 I 0.764
ybx2-a Xenopus laevis AAI69706 D 0.764
P45441 Xenopus laevis P45441 I 0.764
P21574 Xenopus laevis P21574 I 0.764
AAA49716 Xenopus laevis AAA49716 I 0.764
AAI69704 Xenopus laevis AAI69704 I 0.764
ENSGGOG00000023581 Gorilla gorilla ENSGGOG00000023581 I 0.764
ENSMLUG00000004747 Myotis lucifugus ENSMLUG00000004747 I 0.764
e_gw1.21.99.1 Capitella teleta e_gw1.21.99.1 I 0.761
cey-1 Caenorhabditis elegans F33A8.3 I 0.761
WUBG_03960 Wuchereria bancrofti WUBG_03960 I 0.761
Bm1_57515 Brugia malayi Bm1_57515 I 0.761
Aqu1.220698 Amphimedon queenslandica Aqu1.220698 I 0.761
ISCW005281 Ixodes scapularis ISCW005281 I 0.761
gw1.367.31.1 Capitella teleta gw1.367.31.1 I 0.761
gw1.11296.2.1 Capitella teleta gw1.11296.2.1 I 0.761
YBX2 Sus scrofa ENSSSCG00000017938 I 0.750
ENSSSCG00000008860 Sus scrofa ENSSSCG00000008860 I 0.750
YBX2 Canis familiaris ENSCAFG00000016128 I 0.750
A5D7M4_BOVIN Bos taurus ENSBTAG00000009126 I 0.750
Ybx1 Rattus norvegicus ENSRNOG00000032902 I 0.750
ENSTRUG00000011813 Takifugu rubripes ENSTRUG00000011813 I 0.750
ENSCAFG00000000872 Canis familiaris ENSCAFG00000000872 I 0.750
YBX2 Tupaia belangeri ENSTBEG00000001266 I 0.750
YBX2 Procavia capensis ENSPCAG00000008019 I 0.750
ENSEEUG00000007494 Erinaceus europaeus ENSEEUG00000007494 I 0.750
LOC100403904 Callithrix jacchus ENSCJAG00000016581 I 0.750
YBX2 Cavia porcellus ENSCPOG00000009543 I 0.750
YBX2 Homo sapiens ENSG00000006047 D 0.750
YBX2 Gorilla gorilla ENSGGOG00000007399 I 0.750
YBX2 Macaca mulatta ENSMMUG00000022712 I 0.750
Ybx2 Mus musculus ENSMUSG00000018554 I 0.750
YBX2 Loxodonta africana ENSLAFG00000014006 I 0.750
YBX2 Ochotona princeps ENSOPRG00000013773 I 0.750
XR_022686.1 Pan troglodytes ENSPTRG00000008673 I 0.750
LOC100072964 Equus caballus ENSECAG00000009996 I 0.750
Ybx2 Rattus norvegicus ENSRNOG00000017117 I 0.750
gw1.4.101.1 Capitella teleta gw1.4.101.1 I 0.746
YBX2 Myotis lucifugus ENSMLUG00000004686 I 0.746
gw1.93.56.1 Capitella teleta gw1.93.56.1 I 0.746
Minc12652 Meloidogyne incognita Minc12652 I 0.746
ENSCJAG00000033824 Callithrix jacchus ENSCJAG00000033824 I 0.746
ENSTNIG00000010139 Tetraodon nigroviridis ENSTNIG00000010139 I 0.736
YBX2 Sorex araneus ENSSARG00000000488 I 0.736
ENSCJAG00000032211 Callithrix jacchus ENSCJAG00000032211 I 0.736
YBX2 Monodelphis domestica ENSMODG00000017596 I 0.736
ENSCJAG00000007407 Callithrix jacchus ENSCJAG00000007407 I 0.732
146547 Helobdella robusta 146547 I 0.732
gw1.1098.8.1 Capitella teleta gw1.1098.8.1 I 0.732
e_gw1.9027.2.1 Capitella teleta e_gw1.9027.2.1 I 0.732
ENSRNOG00000043268 Rattus norvegicus ENSRNOG00000043268 I 0.732
ENSCJAG00000018832 Callithrix jacchus ENSCJAG00000018832 I 0.732
XM_549034.2 Canis familiaris ENSCAFG00000016523 I 0.732
ENSCJAG00000031567 Callithrix jacchus ENSCJAG00000031567 I 0.732
CJA05984 Caenorhabditis japonica CJA05984 I 0.732
ENSCAFG00000016520 Canis familiaris ENSCAFG00000016520 I 0.732
ENSCJAG00000035120 Callithrix jacchus ENSCJAG00000035120 I 0.722
CSDA Procavia capensis ENSPCAG00000001397 I 0.722
nasonia_NCBI_hmm1188384 Nasonia vitripennis nasonia_NCBI_hmm1188384 I 0.718
ENSMLUG00000003812 Myotis lucifugus ENSMLUG00000003812 I 0.718
Ame_R019916 Ailuropoda melanoleuca Ame_R019916 I 0.718
ENSCAFG00000005471 Canis familiaris ENSCAFG00000005471 I 0.712
CSDA Otolemur garnettii ENSOGAG00000013245 I 0.704
YBX1 Tursiops truncatus ENSTTRG00000001353 I 0.704
YBX1 Ochotona princeps ENSOPRG00000008050 I 0.704
133388 Helobdella robusta 133388 I 0.704
ENSSSCG00000015308 Sus scrofa ENSSSCG00000015308 I 0.704