estExt_Genewise1Plus.C_1630040 (Capitella teleta)
CSD

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00313 (CSD) IPR002059 estExt_Genewise1Plus.C_1630040 T17274_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
YB-1
M111_0.6 		Homo sapiens AACAUCD RNAcompete
Ray et al.(2013)
RNCMPT00116 		0.901
YB-1
M081_0.6 		Homo sapiens AACAUC RNAcompete
Ray et al.(2013)
RNCMPT00083 		0.901
ybx2-a
M260_0.6 		Xenopus laevis GCCANACCAYCGC SELEX
Cook et al.(2011)
130_11376140 		0.847
ybx2-a
M254_0.6 		Xenopus laevis KAACAUCU SELEX
Cook et al.(2011)
115_7499328 		0.847
ybx2-a
M250_0.6 		Xenopus laevis UAACAUC SELEX
Cook et al.(2011)
114_7499328 		0.847
YBX2
M082_0.6 		Homo sapiens AACAWCD RNAcompete
Ray et al.(2013)
RNCMPT00084 		0.819
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
estExt_Genewise1Plus.C_1630040 CSD 23 93

Links

Other CSD family RBPs
Other Capitella teleta RBPs

202 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
gw1.79.157.1 Lottia gigantea gw1.79.157.1 I 0.915
PHUM156710 Pediculus humanus PHUM156710 I 0.901
gw1.11296.2.1 Capitella teleta gw1.11296.2.1 I 0.901
ENSMODG00000022963 Monodelphis domestica ENSMODG00000022963 I 0.889
e_gw.440.24.1 Branchiostoma floridae e_gw.440.24.1 I 0.889
XP_001178393.1 Strongylocentrotus purpuratus XP_001178393.1 I 0.887
XP_785816.1 Strongylocentrotus purpuratus XP_785816.1 I 0.887
gw1.367.31.1 Capitella teleta gw1.367.31.1 I 0.887
YB-1 Homo sapiens ENSG00000065978 D 0.875
CSDA Myotis lucifugus ENSMLUG00000007476 I 0.875
CSDA Homo sapiens ENSG00000060138 I 0.875
YBX1 Gasterosteus aculeatus ENSGACG00000006447 I 0.875
CSDA Echinops telfairi ENSETEG00000002557 I 0.875
CSDA Gorilla gorilla ENSGGOG00000001352 I 0.875
YBX1 Meleagris gallopavo ENSMGAG00000006879 I 0.875
CSDA Loxodonta africana ENSLAFG00000017247 I 0.875
YBX1 Loxodonta africana ENSLAFG00000007597 I 0.875
YBX1 Microcebus murinus ENSMICG00000014984 I 0.875
ENSGALG00000018512 Gallus gallus ENSGALG00000018512 I 0.875
LOC100067336 Equus caballus ENSECAG00000023592 I 0.875
ENSCPOG00000010888 Cavia porcellus ENSCPOG00000010888 I 0.875
CSDA Cavia porcellus ENSCPOG00000011329 I 0.875
LOC100396927 Callithrix jacchus ENSCJAG00000021660 I 0.875
LOC100401646 Callithrix jacchus ENSCJAG00000003155 I 0.875
CSDA Choloepus hoffmanni ENSCHOG00000011988 I 0.875
ybx1 Danio rerio ENSDARG00000004757 I 0.875
Csda Dipodomys ordii ENSDORG00000009103 I 0.875
ENSEEUG00000005657 Erinaceus europaeus ENSEEUG00000005657 I 0.875
ENSMMUG00000013136 Macaca mulatta ENSMMUG00000013136 I 0.875
LOC100065107 Equus caballus ENSECAG00000013777 I 0.875
ENSECAG00000008961 Equus caballus ENSECAG00000008961 I 0.875
CSDA Erinaceus europaeus ENSEEUG00000010415 I 0.875
Ybx1 Mus musculus ENSMUSG00000028639 I 0.875
ENSSTOG00000000116 Spermophilus tridecemlineatus ENSSTOG00000000116 I 0.875
CSDA Tupaia belangeri ENSTBEG00000012570 I 0.875
CSDA Sus scrofa ENSSSCG00000000633 I 0.875
YBOX1_RAT Rattus norvegicus ENSRNOG00000030807 I 0.875
Csda Rattus norvegicus ENSRNOG00000005480 I 0.875
CSDA Taeniopygia guttata ENSTGUG00000012047 I 0.875
YBX1 Taeniopygia guttata ENSTGUG00000017262 I 0.875
ybx1 Xenopus tropicalis ENSXETG00000013436 I 0.875
YBX1 Vicugna pacos ENSVPAG00000000068 I 0.875
Q90WH2_FUGRU Takifugu rubripes ENSTRUG00000015333 I 0.875
YBX1 Tetraodon nigroviridis ENSTNIG00000011989 I 0.875
CSDA Pteropus vampyrus ENSPVAG00000006740 I 0.875
YBX1 Pteropus vampyrus ENSPVAG00000005504 I 0.875
Csda Mus musculus ENSMUSG00000030189 I 0.875
Q9N1Q2_CANFA Canis familiaris ENSCAFG00000013401 I 0.875
CSDA Monodelphis domestica ENSMODG00000018248 I 0.875
YBX1 Monodelphis domestica ENSMODG00000017214 I 0.875
ENSOANG00000001663 Ornithorhynchus anatinus ENSOANG00000001663 I 0.875
YBX1 Ornithorhynchus anatinus ENSOANG00000011725 I 0.875
CSDA Pan troglodytes ENSPTRG00000004681 I 0.875
XR_021659.1 Pan troglodytes ENSPTRG00000000615 I 0.875
ENSPPYG00000004279 Pongo pygmaeus ENSPPYG00000004279 I 0.875
Q8AXS2_ORYLA Oryzias latipes ENSORLG00000004225 I 0.875
CSDA Macaca mulatta ENSMMUG00000022469 I 0.875
YBOX1_CHICK Gallus gallus ENSGALG00000004848 I 0.875
P21573 Xenopus laevis P21573 I 0.875
Q00436 Xenopus laevis Q00436 I 0.875
A5D7Q4_BOVIN Bos taurus ENSBTAG00000009663 I 0.875
CAA42778 Xenopus laevis CAA42778 I 0.875
AAI30161 Xenopus laevis AAI30161 I 0.875
AAA49715 Xenopus laevis AAA49715 I 0.875
AAH41191 Xenopus laevis AAH41191 I 0.875
AAH42217 Xenopus laevis AAH42217 I 0.875
YBOX1_BOVIN Bos taurus ENSBTAG00000017368 I 0.875
AAI06324 Xenopus laevis AAI06324 I 0.875
ENSCAFG00000002541 Canis familiaris ENSCAFG00000002541 I 0.875
amel4_ncbi_hmm4087 Apis mellifera amel4_ncbi_hmm4087 I 0.873
SNAPOd2T00011389001 Oikopleura dioica SNAPOd2T00011389001 I 0.873
gw1.93.56.1 Capitella teleta gw1.93.56.1 I 0.873
gw1.4.101.1 Capitella teleta gw1.4.101.1 I 0.873
e_gw1.21.99.1 Capitella teleta e_gw1.21.99.1 I 0.873
e_gw1.9027.2.1 Capitella teleta e_gw1.9027.2.1 I 0.873
amel4_ncbi_hmm3751 Tribolium castaneum amel4_ncbi_hmm3751 I 0.873
amel4_ncbi_hmm3751 Apis mellifera amel4_ncbi_hmm3751 I 0.873
ENSMMUG00000032563 Macaca mulatta ENSMMUG00000032563 I 0.861
XP_856029.1 Canis familiaris ENSCAFG00000010117 I 0.861
ENSRNOG00000023786 Rattus norvegicus ENSRNOG00000023786 I 0.861
ENSECAG00000011356 Equus caballus ENSECAG00000011356 I 0.861
ENSCJAG00000010572 Callithrix jacchus ENSCJAG00000010572 I 0.861
csda Xenopus tropicalis ENSXETG00000016239 I 0.861
PHUM156720 Pediculus humanus PHUM156720 I 0.859
XP_002154000.1 Hydra magnipapillata XP_002154000.1 I 0.859
gw1.1098.8.1 Capitella teleta gw1.1098.8.1 I 0.859
XP_002159745.1 Hydra magnipapillata XP_002159745.1 I 0.859
AAI55915 Xenopus laevis AAI55915 I 0.847
ENSRNOG00000006596 Rattus norvegicus ENSRNOG00000006596 I 0.847
AAA49716 Xenopus laevis AAA49716 I 0.847
AAI69704 Xenopus laevis AAI69704 I 0.847
ybx2-a Xenopus laevis AAI69706 D 0.847
P21574 Xenopus laevis P21574 I 0.847
ENSMLUG00000004747 Myotis lucifugus ENSMLUG00000004747 I 0.847
ENSGGOG00000023581 Gorilla gorilla ENSGGOG00000023581 I 0.847
ENSBTAG00000006133 Bos taurus ENSBTAG00000006133 I 0.847
GF10852 Drosophila ananassae FBgn0087892 I 0.845
GM24682 Drosophila sechellia FBgn0179545 I 0.845
yps Drosophila melanogaster FBgn0022959 I 0.845
GD12750 Drosophila simulans FBgn0184477 I 0.845
GK16710 Drosophila willistoni FBgn0218712 I 0.845
GJ14010 Drosophila virilis FBgn0201228 I 0.845
GA23502-RA Drosophila pseudoobscura FBgn0244903 I 0.845
GH16919 Drosophila grimshawi FBgn0124390 I 0.845
GE20150 Drosophila yakuba FBgn0237472 I 0.845
GL15684 Drosophila persimilis FBgn0153288 I 0.845
AAEL001375 Aedes aegypti AAEL001375 I 0.845
e_gw.71.100.1 Nematostella vectensis e_gw.71.100.1 I 0.845
GI13673 Drosophila mojavensis FBgn0136428 I 0.845
AGAP006108 Anopheles gambiae AGAP006108 I 0.845
Ybx2 Mus musculus ENSMUSG00000018554 I 0.833
AAI55914 Xenopus laevis AAI55914 I 0.833
YBX2 Cavia porcellus ENSCPOG00000009543 I 0.833
YBX2 Procavia capensis ENSPCAG00000008019 I 0.833
AAA49924 Xenopus laevis AAA49924 I 0.833
LOC100403904 Callithrix jacchus ENSCJAG00000016581 I 0.833
YBX2 Canis familiaris ENSCAFG00000016128 I 0.833
A5D7M4_BOVIN Bos taurus ENSBTAG00000009126 I 0.833
YBX2 Ochotona princeps ENSOPRG00000013773 I 0.833
Ybx2 Rattus norvegicus ENSRNOG00000017117 I 0.833
Ybx1 Rattus norvegicus ENSRNOG00000032902 I 0.833
YBX2 Macaca mulatta ENSMMUG00000022712 I 0.833
P45441 Xenopus laevis P45441 I 0.833
YBX2 Loxodonta africana ENSLAFG00000014006 I 0.833
YBX2 Sus scrofa ENSSSCG00000017938 I 0.833
LOC100072964 Equus caballus ENSECAG00000009996 I 0.833
YBX2 Tupaia belangeri ENSTBEG00000001266 I 0.833
ENSSSCG00000008860 Sus scrofa ENSSSCG00000008860 I 0.833
DGIL_AUG5s15730g8t2 Acyrtosiphon pisum DGIL_AUG5s15730g8t2 I 0.831
NCBI_GNO_0300554 Daphnia pulex NCBI_GNO_0300554 I 0.831
ENSGACG00000019392 Gasterosteus aculeatus ENSGACG00000019392 I 0.819
XR_022686.1 Pan troglodytes ENSPTRG00000008673 I 0.819
Q90WH1_ORYLA Oryzias latipes ENSORLG00000006269 I 0.819
ENSEEUG00000007494 Erinaceus europaeus ENSEEUG00000007494 I 0.819
YBX2 Gorilla gorilla ENSGGOG00000007399 I 0.819
ENSCJAG00000032211 Callithrix jacchus ENSCJAG00000032211 I 0.819
YBX2 Homo sapiens ENSG00000006047 D 0.819
ENSCAFG00000000872 Canis familiaris ENSCAFG00000000872 I 0.819
ENSCSAVG00000003053 Ciona savignyi ENSCSAVG00000003053 I 0.819
YBX2 Monodelphis domestica ENSMODG00000017596 I 0.819
YBX2 Sorex araneus ENSSARG00000000488 I 0.819
ENSRNOG00000043268 Rattus norvegicus ENSRNOG00000043268 I 0.817
gw1.1047.6.1 Capitella teleta gw1.1047.6.1 I 0.817
BGIBMGA000526 Bombyx mori BGIBMGA000526 I 0.817
ENSCAFG00000016520 Canis familiaris ENSCAFG00000016520 I 0.817
WUBG_03960 Wuchereria bancrofti WUBG_03960 I 0.817
ENSCJAG00000033824 Callithrix jacchus ENSCJAG00000033824 I 0.817
Bm1_57515 Brugia malayi Bm1_57515 I 0.817
XM_549034.2 Canis familiaris ENSCAFG00000016523 I 0.817
YBX2 Myotis lucifugus ENSMLUG00000004686 I 0.817
CSDA Procavia capensis ENSPCAG00000001397 I 0.806
ENSTRUG00000011813 Takifugu rubripes ENSTRUG00000011813 I 0.806
Q4H2L7_CIOIN Ciona intestinalis ENSCING00000010654 I 0.806
ENSCJAG00000035120 Callithrix jacchus ENSCJAG00000035120 I 0.806
gw1.598.14.1 Capitella teleta gw1.598.14.1 I 0.806
ENSTNIG00000010139 Tetraodon nigroviridis ENSTNIG00000010139 I 0.806
ENSMLUG00000003812 Myotis lucifugus ENSMLUG00000003812 I 0.803
ENSCJAG00000007407 Callithrix jacchus ENSCJAG00000007407 I 0.803
Ppa-cey-1 Pristionchus pacificus PPA28011 I 0.803
estExt_fgeneshTA2_pg.C_60554 Trichoplax adhaerens estExt_fgeneshTA2_pg.C_60554 I 0.803
ISCW005281 Ixodes scapularis ISCW005281 I 0.803
ENSCJAG00000018832 Callithrix jacchus ENSCJAG00000018832 I 0.803
gw1.342.14.1 Capitella teleta gw1.342.14.1 I 0.803
Ame_R019916 Ailuropoda melanoleuca Ame_R019916 I 0.803
ENSCAFG00000007977 Canis familiaris ENSCAFG00000007977 I 0.789
cey-1 Caenorhabditis elegans F33A8.3 I 0.789
CRE01789 Caenorhabditis remanei CRE01789 I 0.789
YBX1 Tursiops truncatus ENSTTRG00000001353 I 0.789
CBN16711 Caenorhabditis brenneri CBN16711 I 0.789
133388 Helobdella robusta 133388 I 0.789
ENSSSCG00000015308 Sus scrofa ENSSSCG00000015308 I 0.789
ENSCJAG00000031567 Callithrix jacchus ENSCJAG00000031567 I 0.789
e_gw1.343.39.1 Capitella teleta e_gw1.343.39.1 I 0.789
ENSCAFG00000005471 Canis familiaris ENSCAFG00000005471 I 0.781
CSDA Otolemur garnettii ENSOGAG00000013245 I 0.775
YBX1 Ochotona princeps ENSOPRG00000008050 I 0.775
CBG02981 Caenorhabditis briggsae CBG02981 I 0.775
CJA05984 Caenorhabditis japonica CJA05984 I 0.761
ENSCJAG00000000083 Callithrix jacchus ENSCJAG00000000083 I 0.761
ENSCJAG00000018092 Callithrix jacchus ENSCJAG00000018092 I 0.761
Minc12652 Meloidogyne incognita Minc12652 I 0.761
gw1.4124.2.1 Capitella teleta gw1.4124.2.1 I 0.761
YBX1 Tarsius syrichta ENSTSYG00000006915 I 0.761
CSDA Vicugna pacos ENSVPAG00000000876 I 0.750
CSDA Microcebus murinus ENSMICG00000004602 I 0.750
fgenesh1_pg.C_scaffold_1662000001 Capitella teleta fgenesh1_pg.C_scaffold_1662000001 N 0.746
nasonia_NCBI_hmm1188384 Nasonia vitripennis nasonia_NCBI_hmm1188384 I 0.746
146547 Helobdella robusta 146547 I 0.746
Aqu1.220698 Amphimedon queenslandica Aqu1.220698 I 0.746
YBX1 Sorex araneus ENSSARG00000012628 I 0.746
gw1.863.5.1 Capitella teleta gw1.863.5.1 I 0.746
ENSSSCG00000012830 Sus scrofa ENSSSCG00000012830 I 0.746
LOAG_11791 Loa loa LOAG_11791 I 0.746
ENSPPYG00000001466 Pongo pygmaeus ENSPPYG00000001466 I 0.736
ENSCJAG00000031891 Callithrix jacchus ENSCJAG00000031891 I 0.722
RGD1562120 Rattus norvegicus ENSRNOG00000040034 I 0.718
ENSGGOG00000004758 Gorilla gorilla ENSGGOG00000004758 I 0.718
ENSCJAG00000035469 Callithrix jacchus ENSCJAG00000035469 I 0.718
YBX2 Macropus eugenii ENSMEUG00000006947 I 0.718
ENSRNOG00000011939 Rattus norvegicus ENSRNOG00000011939 I 0.718
YBX1 Dasypus novemcinctus ENSDNOG00000014149 I 0.708
CSDA Oryctolagus cuniculus ENSOCUG00000001889 I 0.704