YB-1 (Homo sapiens)
CSD

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00313 (CSD) IPR002059 ENSG00000065978 T16855_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
YB-1
M081_0.6		 Homo sapiens AACAUC RNAcompete
Ray et al.(2013)
RNCMPT00083 		(Direct)
YB-1
M111_0.6		 Homo sapiens AACAUCD RNAcompete
Ray et al.(2013)
RNCMPT00116 		(Direct)

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
ybx2-a
M250_0.6 		Xenopus laevis UAACAUC SELEX
Cook et al.(2011)
114_7499328 		0.931
ybx2-a
M260_0.6 		Xenopus laevis GCCANACCAYCGC SELEX
Cook et al.(2011)
130_11376140 		0.931
ybx2-a
M254_0.6 		Xenopus laevis KAACAUCU SELEX
Cook et al.(2011)
115_7499328 		0.931
YBX2
M082_0.6 		Homo sapiens AACAWCD RNAcompete
Ray et al.(2013)
RNCMPT00084 		0.917
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

Experimental Constructs

Motif ID Domain From To Sequence
M081_0.6 CSD 58 128
M111_0.6 CSD 58 128

RNA Binding Domains

Protein ID Domain From To Sequence
ENSP00000361621 CSD 54 124
ENSP00000361626 CSD 58 128
ENSP00000389639 CSD 126 178
ENSP00000405937 CSD 58 97

Links

Other CSD family RBPs
Other Homo sapiens RBPs

233 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Genemark.10144_g Serpula lacrymans Genemark.10144_g N 0.000
Genemark.4749_g Serpula lacrymans Genemark.4749_g N 0.000
Genemark.4999_g Serpula lacrymans Genemark.4999_g N 0.000
Genemark.5111_g Serpula lacrymans Genemark.5111_g N 0.000
Genemark.6054_g Serpula lacrymans Genemark.6054_g N 0.000
Genemark.618_g Serpula lacrymans Genemark.618_g N 0.000
Genemark.7257_g Serpula lacrymans Genemark.7257_g N 0.000
Genemark.8022_g Serpula lacrymans Genemark.8022_g N 0.000
Genemark.8882_g Serpula lacrymans Genemark.8882_g N 0.000
Genemark.940_g Serpula lacrymans Genemark.940_g N 0.000
Genemark.9714_g Serpula lacrymans Genemark.9714_g N 0.000
Genemark.983_g Serpula lacrymans Genemark.983_g N 0.000
Genemark.469_g Serpula lacrymans Genemark.469_g N 0.000
Genemark.446_g Serpula lacrymans Genemark.446_g N 0.000
Genemark.11049_g Serpula lacrymans Genemark.11049_g N 0.000
Genemark.11600_g Serpula lacrymans Genemark.11600_g N 0.000
Genemark.11813_g Serpula lacrymans Genemark.11813_g N 0.000
Genemark.12122_g Serpula lacrymans Genemark.12122_g N 0.000
Genemark.12199_g Serpula lacrymans Genemark.12199_g N 0.000
Genemark.1877_g Serpula lacrymans Genemark.1877_g N 0.000
Genemark.2320_g Serpula lacrymans Genemark.2320_g N 0.000
Genemark.2532_g Serpula lacrymans Genemark.2532_g N 0.000
Genemark.2652_g Serpula lacrymans Genemark.2652_g N 0.000
Genemark.3124_g Serpula lacrymans Genemark.3124_g N 0.000
Genemark.4399_g Serpula lacrymans Genemark.4399_g N 0.000
Minc10827 Meloidogyne incognita Minc10827 N 0.000