CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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Genemark.6054_g
(
Serpula lacrymans
)
CCHC ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00098 (zf-CCHC)
IPR001878
Genemark.6054_g
T15759_0.6
Superfamily (2011-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
Genemark.6054_g
CCHC ZF
227
244
FTCYNCGQEGHIARKCTN
Links
Other
CCHC ZF
family RBPs
Other
Serpula lacrymans
RBPs
26 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
Genemark.11813_g
Serpula lacrymans
Genemark.11813_g
N
1.000
Genemark.3014_g
Serpula lacrymans
Genemark.3014_g
N
0.944
Genemark.10526_g
Serpula lacrymans
Genemark.10526_g
N
0.944
Genemark.12031_g
Serpula lacrymans
Genemark.12031_g
N
0.889
Genemark.11725_g
Serpula lacrymans
Genemark.11725_g
N
0.889
Genemark.75_g
Serpula lacrymans
Genemark.75_g
N
0.833
Genemark.10975_g
Serpula lacrymans
Genemark.10975_g
N
0.833
Genemark.618_g
Serpula lacrymans
Genemark.618_g
N
0.778
Genemark.826_g
Serpula lacrymans
Genemark.826_g
N
0.778
Genemark.3124_g
Serpula lacrymans
Genemark.3124_g
N
0.778
Genemark.12199_g
Serpula lacrymans
Genemark.12199_g
N
0.778
fgenesh2_pg.C_sca_43000080
Lottia gigantea
fgenesh2_pg.C_sca_43000080
N
0.778
Genemark.4749_g
Serpula lacrymans
Genemark.4749_g
N
0.778
Genemark.446_g
Serpula lacrymans
Genemark.446_g
N
0.778
Genemark.940_g
Serpula lacrymans
Genemark.940_g
N
0.778
Genemark.983_g
Serpula lacrymans
Genemark.983_g
N
0.778
Genemark.1877_g
Serpula lacrymans
Genemark.1877_g
N
0.722
Genemark.469_g
Serpula lacrymans
Genemark.469_g
N
0.722
Genemark.6548_g
Serpula lacrymans
Genemark.6548_g
N
0.722
Genemark.7257_g
Serpula lacrymans
Genemark.7257_g
N
0.722
Minc10827
Meloidogyne incognita
Minc10827
N
0.722
Genemark.8882_g
Serpula lacrymans
Genemark.8882_g
N
0.722
PMAA_015520
Penicillium marneffei
PMAA_015520
N
0.722
Genemark.12016_g
Serpula lacrymans
Genemark.12016_g
N
0.722
Genemark.8022_g
Serpula lacrymans
Genemark.8022_g
N
0.722
Genemark.12122_g
Serpula lacrymans
Genemark.12122_g
N
0.722