CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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CC1G_15706
(
Coprinopsis cinerea
)
La
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF05383 (La)
IPR006630
CC1G_15706
T22573_0.6
Broad (2011-Oct-27)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
CC1G_15706T0
La
1046
1103
LLGQLEYYLSPQNMAQDFFLRQRMDSRGWIHIPLIASFNRIRSLTMDLNLVREVLHLS
Links
Other
La
family RBPs
Other
Coprinopsis cinerea
RBPs
4 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
TGGT1_064600
Toxoplasma gondii
TGGT1_064600
N
0.000
TGME49_121560
Toxoplasma gondii
TGME49_121560
N
0.000
fgenesh1_pg.C_scaffold_1000282
Cochliobolus heterostrophus C5
fgenesh1_pg.C_scaffold_1000282
N
0.000
fgenesh1_pg.C_scaffold_175000012
Daphnia pulex
fgenesh1_pg.C_scaffold_175000012
N
0.000
fgenesh1_pg.C_scaffold_24000131
Cochliobolus heterostrophus C5
fgenesh1_pg.C_scaffold_24000131
N
0.000
fgenesh1_pg.C_scaffold_26000001
Cochliobolus heterostrophus C5
fgenesh1_pg.C_scaffold_26000001
N
0.000
fgenesh1_pg.C_scaffold_59000001
Cochliobolus heterostrophus C5
fgenesh1_pg.C_scaffold_59000001
N
0.000
e_gw1.2.2556.1
Agaricus bisporus
e_gw1.2.2556.1
N
0.000