fgenesh1_pg.C_scaffold_175000012 (Daphnia pulex)
CCHC ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00098 (zf-CCHC) IPR001878 fgenesh1_pg.C_scaffold_175000012 T13797_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
fgenesh1_pg.C_scaffold_175000012 CCHC ZF 433 450

Links

Other CCHC ZF family RBPs
Other Daphnia pulex RBPs

28 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
fgenesh1_pg.C_scaffold_205000008 Daphnia pulex fgenesh1_pg.C_scaffold_205000008 N 0.944
SNAP_00020521 Daphnia pulex SNAP_00020521 N 0.944
SNAP_00031168 Daphnia pulex SNAP_00031168 N 0.944
SNAP_00037736 Daphnia pulex SNAP_00037736 N 0.944
fgenesh1_pg.C_scaffold_140000007 Daphnia pulex fgenesh1_pg.C_scaffold_140000007 N 0.944
SNAP_00038773 Daphnia pulex SNAP_00038773 N 0.944
NCBI_GNO_456000001 Daphnia pulex NCBI_GNO_456000001 N 0.944
SNAP_00029977 Daphnia pulex SNAP_00029977 N 0.944
fgenesh1_pg.C_scaffold_33000112 Daphnia pulex fgenesh1_pg.C_scaffold_33000112 N 0.944
fgenesh1_pg.C_scaffold_386000003 Daphnia pulex fgenesh1_pg.C_scaffold_386000003 N 0.944
fgenesh1_pg.C_scaffold_55000099 Daphnia pulex fgenesh1_pg.C_scaffold_55000099 N 0.889
SNAP_00026457 Daphnia pulex SNAP_00026457 N 0.889
fgenesh1_pg.C_scaffold_829000002 Daphnia pulex fgenesh1_pg.C_scaffold_829000002 N 0.889
fgenesh1_pg.C_scaffold_169000020 Daphnia pulex fgenesh1_pg.C_scaffold_169000020 N 0.778
AT1G50810 Arabidopsis thaliana AT1G50810-TAIR-G N 0.778
AT2G15650 Arabidopsis thaliana AT2G15650-TAIR-G N 0.778
AT1G35115 Arabidopsis thaliana AT1G35115-TAIR-G N 0.778
fgenesh1_pg.C_scaffold_1000282 Cochliobolus heterostrophus C5 fgenesh1_pg.C_scaffold_1000282 N 0.722
cassava33875.m1 Manihot esculenta cassava33875.m1 N 0.722
Aqu1.209597 Amphimedon queenslandica Aqu1.209597 N 0.722
BGIBMGA012989 Bombyx mori BGIBMGA012989 N 0.722
s_475569 Phytophthora sojae s_475569 N 0.722
Glyma01g26610.1 Glycine max Glyma01g26610.1 N 0.722
fgenesh1_pg.C_scaffold_59000001 Cochliobolus heterostrophus C5 fgenesh1_pg.C_scaffold_59000001 N 0.722
fgenesh1_pg.C_scaffold_40000019 Cochliobolus heterostrophus C5 fgenesh1_pg.C_scaffold_40000019 N 0.722
PMAA_015550 Penicillium marneffei PMAA_015550 N 0.722
Glyma13g15110.1 Glycine max Glyma13g15110.1 N 0.722
PMAA_102830 Penicillium marneffei PMAA_102830 N 0.722