B9HGC1_POPTR (Populus trichocarpa)
La,RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF05383 (La)
PF00076 (RRM_1) 		IPR006630
IPR000504 		POPTR_0007s00450 T23504_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0007s00450.1 La 192 251
POPTR_0007s00450.1 RRM 282 321
POPTR_0007s00450.1 RRM 328 362
POPTR_0007s00450.2 La 192 251
POPTR_0007s00450.2 RRM 282 321
POPTR_0007s00450.2 RRM 328 362
POPTR_0007s00450.3 La 192 251
POPTR_0007s00450.3 RRM 282 321
POPTR_0007s00450.3 RRM 328 362

Links

Other La,RRM family RBPs
Other Populus trichocarpa RBPs

15 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AMAG_12737 Allomyces macrogynus AMAG_12737 N 0.000
FGSG_10829 Fusarium graminearum FGSG_10829 N 0.000
FVEG_11503 Fusarium verticillioides FVEG_11503 N 0.000
GLRG_05139 Colletotrichum graminicola GLRG_05139 N 0.000
PTRG_00525 Pyrenophora tritici repentis PTRG_00525 N 0.000
SNOG_06906 Stagonospora nodorum SNOG_06906 N 0.000
AFLA_095620 Aspergillus flavus CADAFLAG00009247 N 0.000
AO090113000083 Aspergillus oryzae CADAORAG00011692 N 0.000
EAT85557.1 Phaeosphaeria nodorum EAT85557.1 N 0.000