MDP0000319167 (Malus x domestica)
PUF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00806 (PUF) IPR001313 MDP0000319167 T25206_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
MDP0000319167 PUF 788 822
MDP0000319167 PUF 825 858
MDP0000319167 PUF 860 894
MDP0000319167 PUF 896 930
MDP0000319167 PUF 932 964
MDP0000319167 PUF 969 1003
MDP0000319167 PUF 1005 1039
MDP0000319167 PUF 1052 1081

Links

Other PUF family RBPs
Other Malus x domestica RBPs

78 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ppa000731m Prunus persica ppa000731m N 0.775
Glyma15g04060.1 Glycine max Glyma15g04060.1 N 0.934
Glyma12g06450.1 Glycine max Glyma12g06450.1 N 0.906
Glyma12g06430.1 Glycine max Glyma12g06430.1 N 0.902
Glyma11g14550.1 Glycine max Glyma11g14550.1 N 0.902
Glyma11g14530.1 Glycine max Glyma11g14530.1 N 0.902
Glyma11g14500.1 Glycine max Glyma11g14500.1 N 0.909
Glyma10g35290.1 Glycine max Glyma10g35290.1 N 0.746
estExt_Genewise1.C_960051 Physcomitrella patens estExt_Genewise1.C_960051 N 0.789
estExt_Genewise1.C_350182 Physcomitrella patens estExt_Genewise1.C_350182 N 0.774
e_gw1.96.1.1 Physcomitrella patens e_gw1.96.1.1 N 0.792
e_gw1.2.1396.1 Selaginella moellendorfii e_gw1.2.1396.1 N 0.762
Cucsa.308530 Cucumis sativus Cucsa.308530 N 0.754
Cucsa.165170 Cucumis sativus Cucsa.165170 N 0.819
Cucsa.138830 Cucumis sativus Cucsa.138830 N 0.916
cassava33553.m1 Manihot esculenta cassava33553.m1 N 0.768
cassava30949.valid.m1 Manihot esculenta cassava30949.valid.m1 N 0.930
Glyma20g32230.1 Glycine max Glyma20g32230.1 N 0.742
gw1.2.45.1 Selaginella moellendorfii gw1.2.45.1 N 0.799
mgf011401m Mimulus guttatus mgf011401m N 0.746
ppa000627m Prunus persica ppa000627m N 0.952
ppa000626m Prunus persica ppa000626m N 0.851
MDP0000776183 Malus x domestica MDP0000776183 N 0.844
MDP0000314338 Malus x domestica MDP0000314338 N 0.847
MDP0000191652 Malus x domestica MDP0000191652 N 0.904
MDP0000176743 Malus x domestica MDP0000176743 N 0.736
Medtr5g087730 Medicago truncatula Medtr5g087730 N 0.772
Medtr4g084270 Medicago truncatula Medtr4g084270 N 0.898
Medtr2g117180 Medicago truncatula Medtr2g117180 N 0.912
Medtr1g120450 Medicago truncatula Medtr1g120450 N 0.736
GRMZM2G123537 Zea mays GRMZM2G123537 N 0.738
GRMZM2G042623 Zea mays GRMZM2G042623 N 0.795
GRMZM2G012964 Zea mays GRMZM2G012964 N 0.791
mgf015734m Mimulus guttatus mgf015734m N 0.886
mgf015234m Mimulus guttatus mgf015234m N 0.815
cassava30948.valid.m1 Manihot esculenta cassava30948.valid.m1 N 0.930
cassava19437.valid.m1 Manihot esculenta cassava19437.valid.m1 N 0.938
LOC_Os01g62650 Oryza sativa LOC_Os01g62650 N 0.855
GSVIVG00024918001 Vitis vinifera GSVIVG00024918001 N 0.909
GSVIVG00016507001 Vitis vinifera GSVIVG00016507001 N 0.859
GSVIVG00016236001 Vitis vinifera GSVIVG00016236001 N 0.739
XM_002880988.1 Arabidopsis lyrata fgenesh2_kg.4__898__AT2G29200.1 N 0.877
XM_002879157.1 Arabidopsis lyrata fgenesh2_kg.4__893__AT2G29140.1 N 0.880
BRADI3G55540 Brachypodium distachyon BRADI3G55540 N 0.731
BRADI2G39410 Brachypodium distachyon BRADI2G39410 N 0.784
BRADI2G39240 Brachypodium distachyon BRADI2G39240 N 0.784
BGIOSIBCE017275 Oryza indica BGIOSIBCE017275 N 0.803
BGIOSIBCE005171 Oryza indica BGIOSIBCE005171 N 0.789
APUM4 Arabidopsis thaliana AT3G10360-TAIR-G N 0.721
APUM1 Arabidopsis thaliana AT2G29200-TAIR-G N 0.884
APUM3 Arabidopsis thaliana AT2G29140-TAIR-G N 0.870
PK21390.1 Cannabis sativa PK21390.1 N 0.934
PK01617.1 Cannabis sativa PK01617.1 N 0.765
LOC_Os01g74030 Oryza sativa LOC_Os01g74030 N 0.789
LOC_Os02g57390 Oryza sativa LOC_Os02g57390 N 0.750
LOC_Os05g01910 Oryza sativa LOC_Os05g01910 N 0.803
cassava19436.valid.m1 Manihot esculenta cassava19436.valid.m1 N 0.935
cassava13144.valid.m1 Manihot esculenta cassava13144.valid.m1 N 0.862
cassava10774.m1 Manihot esculenta cassava10774.m1 N 0.743
30143.m001164 Ricinus communis 30143.m001164 N 0.851
30143.m001162 Ricinus communis 30143.m001162 N 0.812
29595.m000292 Ricinus communis 29595.m000292 N 0.761
scaffold_4100004.1 Arabidopsis lyrata scaffold_4100004.1 N 0.880
SB09G001090 Sorghum bicolor Sb09g001090 N 0.795
SB04G037410 Sorghum bicolor Sb04g037410 N 0.749
SB03G039600 Sorghum bicolor Sb03g039600 N 0.844
B9HUI2_POPTR Populus trichocarpa POPTR_0010s23250 N 0.739
B9HTG3_POPTR Populus trichocarpa POPTR_0010s20870 N 0.862
B9HPE1_POPTR Populus trichocarpa POPTR_0009s03980 N 0.901
B9HMK2_POPTR Populus trichocarpa POPTR_0008s05850 N 0.851
XM_002311043.1 Populus trichocarpa POPTR_0008s03630 N 0.750
B9GJ97_POPTR Populus trichocarpa POPTR_0001s25020 N 0.898
PK00601.1 Cannabis sativa PK00601.1 N 0.841