PDK_20s1466551g001 (Phoenix dactylifera)
RanBP ZF,RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00641 (zf-RanBP)
PF00076 (RRM_1) 		IPR001876
IPR000504 		PDK_20s1466551g001 T25897_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
PDK_20s1466551g001 RRM 15 93
PDK_20s1466551g001 RanBP ZF 138 169
PDK_20s1466551g001 RanBP ZF 206 234

Links

Other RanBP ZF,RRM family RBPs
Other Phoenix dactylifera RBPs

25 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
PK07290.1 Cannabis sativa PK07290.1 N 0.879
Cucsa.338570 Cucumis sativus Cucsa.338570 N 0.864
e_gw1.19.421.1 Selaginella moellendorfii e_gw1.19.421.1 N 0.807
Glyma11g11060.1 Glycine max Glyma11g11060.1 N 0.844
Glyma12g03260.1 Glycine max Glyma12g03260.1 N 0.851
mgf016255m Mimulus guttatus mgf016255m N 0.843
AC185415.3_FG005 Zea mays AC185415.3_FG005 N 0.871
AC233865.1_FG006 Zea mays AC233865.1_FG006 N 0.886
MDP0000121074 Malus x domestica MDP0000121074 N 0.864
MDP0000299312 Malus x domestica MDP0000299312 N 0.864
ppa006646m Prunus persica ppa006646m N 0.844
cassava6410.valid.m1 Manihot esculenta cassava6410.valid.m1 N 0.871
30100.m000780 Ricinus communis 30100.m000780 N 0.850
XM_002894200.1 Arabidopsis lyrata scaffold_104754.1 N 0.843
TAF15 Arabidopsis thaliana AT1G50300-TAIR-G N 0.843
BGIOSIBCE024476 Oryza indica BGIOSIBCE024476 N 0.871
BGIOSIBCE029383 Oryza indica BGIOSIBCE029383 N 0.879
BRADI1G19280 Brachypodium distachyon BRADI1G19280 N 0.857
GSVIVG00010206001 Vitis vinifera GSVIVG00010206001 N 0.879
LOC_Os07g19560 Oryza sativa LOC_Os07g19560 N 0.871
LOC_Os09g12800 Oryza sativa LOC_Os09g12800 N 0.879
B9HI59_POPTR Populus trichocarpa POPTR_0008s08490 N 0.814
B9HY23_POPTR Populus trichocarpa POPTR_0010s17780 N 0.821
SB02G032170 Sorghum bicolor Sb02g032170 N 0.879
ppa009031m Prunus persica ppa009031m N 0.844