CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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NUP153
(
Gasterosteus aculeatus
)
RanBP ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00641 (zf-RanBP)
IPR001876
ENSGACG00000005389
T26480_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSGACP00000007130
RanBP ZF
663
689
GWSCDVCMVQNKPSETKCACCMAPQPS
ENSGACP00000007130
RanBP ZF
730
759
PAGTWECDTCLVLNKPDAVKCVACETAKPG
ENSGACP00000007130
RanBP ZF
799
828
PEGAWECDTCMVENKAENTKCVACMSAKPG
ENSGACP00000007130
RanBP ZF
852
881
PEGAWECEVCFVQNKAADVQCVACQGVKPG
Links
Other
RanBP ZF
family RBPs
Other
Gasterosteus aculeatus
RBPs
4 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
nasonia_NCBI_hmm152304
Nasonia vitripennis
nasonia_NCBI_hmm152304
N
0.000
nasonia_NCBI_hmm159154
Nasonia vitripennis
nasonia_NCBI_hmm159154
N
0.000
nasonia_NCBI_hmm172254
Nasonia vitripennis
nasonia_NCBI_hmm172254
N
0.000
nasonia_NCBI_hmm256354
Nasonia vitripennis
nasonia_NCBI_hmm256354
N
0.000
nasonia_NCBI_hmm460854
Nasonia vitripennis
nasonia_NCBI_hmm460854
N
0.000
fgenesh1_pg.C_scaffold_11925000001
Capitella teleta
fgenesh1_pg.C_scaffold_11925000001
N
0.000
fgenesh1_pg.C_scaffold_6026000001
Capitella teleta
fgenesh1_pg.C_scaffold_6026000001
N
0.000
fgenesh1_pg.C_scaffold_642000003
Capitella teleta
fgenesh1_pg.C_scaffold_642000003
N
0.000
fgenesh1_pg.C_scaffold_836000001
Capitella teleta
fgenesh1_pg.C_scaffold_836000001
N
0.000