cassava40376.m1 (Manihot esculenta)
RanBP ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00641 (zf-RanBP) IPR001876 cassava40376.m1 T27321_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
cassava40376.m1 RanBP ZF 282 310
cassava40376.m1 RanBP ZF 326 352
cassava40376.m1 RanBP ZF 360 388

Links

Other RanBP ZF family RBPs
Other Manihot esculenta RBPs

19 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
PK13606.1 Cannabis sativa PK13606.1 N 0.000
Glyma07g35050.1 Glycine max Glyma07g35050.1 N 0.000
Glyma20g02910.1 Glycine max Glyma20g02910.1 N 0.000
mgf008467m Mimulus guttatus mgf008467m N 0.000
GRMZM2G003527 Zea mays GRMZM2G003527 N 0.000
GRMZM2G145034 Zea mays GRMZM2G145034 N 0.000
Medtr4g115110 Medicago truncatula Medtr4g115110 N 0.000
chr4.CM0229.230.nc Lotus japonicus chr4.CM0229.230.nc N 0.000
MDP0000162585 Malus x domestica MDP0000162585 N 0.000
PDK_20s1603131g002 Phoenix dactylifera PDK_20s1603131g002 N 0.000
estExt_fgenesh1_pg.C_2810007 Physcomitrella patens estExt_fgenesh1_pg.C_2810007 N 0.000
Cucsa.048210 Cucumis sativus Cucsa.048210 N 0.000
cassava31871.valid.m1 Manihot esculenta cassava31871.valid.m1 N 0.000
DRT111 Arabidopsis thaliana AT1G30480-TAIR-G N 0.000
BGIOSIBCE002155 Oryza indica BGIOSIBCE002155 N 0.000
XM_002890828.1 Arabidopsis lyrata fgenesh2_kg.1__3230__AT1G30480.1 N 0.000
GSVIVG00021628001 Vitis vinifera GSVIVG00021628001 N 0.000
LOC_Os01g34190 Oryza sativa LOC_Os01g34190 N 0.000
B9GGD6_POPTR Populus trichocarpa POPTR_0001s38150 N 0.000
B9NB85_POPTR Populus trichocarpa POPTR_0011s10050 N 0.000
SB10G003990 Sorghum bicolor Sb10g003990 N 0.000
cassava24157.valid.m1 Manihot esculenta cassava24157.valid.m1 N 0.000
ppa007087m Prunus persica ppa007087m N 0.000